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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atactcactcaacctgggatcgtatgattttttatttttatttttgtaatttatctttctgtttttctgttgtgcaaattggatgagattttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGTCCCAAGTAAGGTTCTGACAAAGCATGTCTTATCCGGGCTTGCTGCTTCC

Basic information

species Glycine max
transcript GLYMA14G02880.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402467|gb|EV272280.1|EV272280
EST:     CTTCGTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         ACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
EST: gi|208233708|gb|GE029489.1|GE029489
EST:     CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         TCAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
EST: gi|298173376|gb|HO016712.1|HO016712
EST:     CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         ACAATGCAGGACAGTGTCAGGAAGGACATT-GTGAAGTGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
EST: gi|192329283|gb|FK020202.1|FK020202
EST:     CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         ACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
EST: gi|151397681|gb|EV267554.1|EV267554
EST:     CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         ACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
EST: gi|192298179|gb|FG991684.1|FG991684
EST:     CTTCTTCTACGAGCATCGCCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         ACAATGCAGGACAGTGTCAGGAAGGGCATTGGTGAAGTGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
EST: gi|193476649|gb|FK442212.1|FK442212
EST:     CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         ACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
EST: gi|5760401|gb|AI965692.1|AI965692
EST:     CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         ACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGAGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
EST: gi|298189122|gb|HO037525.1|HO037525
EST:     CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAG                         ACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT
genomic: CTTCTTCTACGAGCATCACCTCCTCCACTTCACCCTTCTTCTTATCCGAGgtaacaaatc ... ttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatttatctttctgtttttctgttgtgcaaattggatgagattttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGTCCCAAGTAAGGTTCTGACAAAGCATGTCTTATCCGGGCTTGCTGCTTCC
                                           ttttgttt  CT-rich tract
                                          attttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atactcactcaacctgggatcgtatgattttttatttttatttttgtaatttatctttctgtttttctgttgtgcaaattggatgagattttgtttacagACAATGCAGGACAGTGTCAGGAAGGACATTGGTGAAGTGCTCATTGGAAGTCCCAAGTAAGGTTCTGACAAAGCATGTCTTATCCGGGCTTGCTGCTTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - tcactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatga