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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacttaacttccgtcgtttttccactctcctgcgtcgttttaatagtccaattaagtactcatgcatgtattcatgcgtcgtcgtttcaaggctcacacggttaatattttatatattttagAAGAGAGAGTTATTTCAGGATCTTGCTCCATTATTGTGGAATTCTTTTGGTACCATGTCAGCACTTTTACAG

Basic information

species Glycine max
transcript GLYMA14G02480.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02480.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G20800.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------------------------gtactacttaacttccgtcgtttttccactctcctgcgtcgttttaatagtcc-----aattaagtactcatg-catgtattcatgcgt-cgtcgtttcaagg--ctcacacggttaatatttta------tatattttagAAGAGAGAGTTATTTCAGGATCTTGCTCCATTATTGTGGAATTCTTTTGGTACCATGTCAGCACTTTTACAG
                                                  ||  |  ||    || |     |   |   | |  | ||   | |   | |       | || || |||  |  ||  |  |  || ||  ||   ||   |    |    | ||   |   |||      | | || ||||| ||||| || ||||||||||| || || || |||||||| ||||||||||||||  | ||  | ||||||
gttttcttataatctctcatgttttcttcttcatttcttccatctgggcagtcgttttttttgtctgattcgtcaacgagcgctagggttactcttgaaatttgctaaagttgagaacttttctcaaattgtgttgagtatgtgaatttgggaacttggttcagtatctgaattagtggtttcttttgtagAAAAGAGAATTGTTTCAGGATCTGGCGCCTTTGTTGTGGAACTCTTTTGGTACCATTGCTGCCTTGTTACAG

upper sequence: GLYMA14G02480.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv19s0090g00930.t01 (Vitis vinifera), 3'ss of exon 3
gtactacttaacttccgtcgtttttccactctcctgcgtcgttttaatagtccaattaagtactcatgcatgtattcatgcgtcgtcgtttcaaggctcacacggttaatattttatatattttagAAGAGAGAGTTATTTCAGGATCTTGCTCCATTATTGTGGAATTCTTTTGGTACCATGTCAGCACTTTTACAG
                                                                                 ||   | |   ||   |     ||||  | || |   |  ||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||| ||  | ||||| || |||
---------------------------------------------------------------------------------gtatgcctaataaacttgttttggtt--ttttgttctttctttagAAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattcatgcgtcgtcgtttcaaggctcacacggttaatattttatatattttagAAGAGAGAGTTATTTCAGGATCTTGCTCCATTATTGTGGAATTCTTTTGGTACCATGTCAGCACTTTTACAG
                              acggttaatattttat  TA-rich tract