1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgaaaaatagacatcagacaaatagcccttatctgcatgtttgtcttgttttttttttttgtcttaaattttcccaccttcttgtgtttgtggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTTTGGGTGCACCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG
species | Glycine max |
transcript | GLYMA14G02260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTTACAGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAG GGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTTEST: gi|5688245|gb|AI941260.1|AI941260
genomic: GATTCACAGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAGgtgttcttct ... tggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTT
EST: AGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAG GGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTTEST: gi|298166087|gb|HO009058.1|HO009058
genomic: AGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAGgtgttcttct ... tggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTT
EST: GATTCACAGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAG GGCAGGCAAATCTATTGAAGTCGTCAACCTTAGTTGTGGGGGCTGGAGGTTEST: gi|208193632|gb|GD992979.1|GD992979
genomic: GATTCACAGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAGgtgttcttct ... tggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTT
EST: GATTCACAGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAG GGCAGGCAAATCTATTGAAGTCGTCAATCTTEST: gi|192312357|gb|FK005361.1|FK005361
genomic: GATTCACAGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAGgtgttcttct ... tggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTT
EST: GATTTACAGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAG GGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTT
genomic: GATTCACAGATACAGTCGCCACCTTGTGCTCCCTTCCTTTGGTGTTCAAGgtgttcttct ... tggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTT
ttgttttttttttttgtcttaaattttcccaccttcttgtgtttgtggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTTTGGGTGCACCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG
ttttttttttgtctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaaaaatagacatcagacaaatagcccttatctgcatgtttgtcttgttttttttttttgtcttaaattttcccaccttcttgtgtttgtggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTTTGGGTGCACCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- aaaaata
- - - - - - - - - - - -agccctt
- - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg