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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattcatgtactgtaatttccaaatgatcatgtgcaaatgagaaatgtttagtttaataaatagtgtttcacaaagatatgattctgaatgcaatgtccagGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACTGTGACTTCAGATAAACTCTTGTATAGATTTGTG

Basic information

species Glycine max
transcript GLYMA14G02210.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02210.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv19s0090g01220.t01 (Vitis vinifera), 3'ss of exon 2
gtaagcattcatgtactgtaatttccaaatgatcatgtgcaaatgagaaatgtttagtttaataaatagtgtttcacaaagat-atgattctgaatgcaatgtccagGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACTGTGACTTCAGATAAACTCTTGTATAGATTTGTG
                           || ||  | ||    |      |||||   || ||   |   || | ||   |||| ||   | |  |||  || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||| |||| ||||   | |||
-------------------------gtaacgactaagtctctac-----atgttctcttcaagtgac--tgatacatttagatgattgctttacatgttat-tccagGCATTTTTTCTTCACAGCAATGCTGTTCGTATATGGCCGTATTCTCAGTCAACAGCTTGTGAATACTATGAGTACAGATAAATTCTTCTATAAGCTCGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttagtttaataaatagtgtttcacaaagatatgattctgaatgcaatgtccagGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACTGTGACTTCAGATAAACTCTTGTATAGATTTGTG
     gtttaat  putative branch site (score: 4)
      tttaataaatagtgtt  TA-rich tract