1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttctactttcttgatcttcgtagaagagaagaaatgtttctctgtgcgtttggtggaagcagaaagaattttcaagtcatttttatattttgaggtgcagGCTAGGTGTCGCTGGGACTTCAATGGCAGTGACTGAAGCTCAGAATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAG
species | Glycine max |
transcript | GLYMA14G02180.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGCATTCCCCTAGATCTGCTTCTTCCTCATTGCTCTGTGAATGCAA GCTAGGTGTCGCTGGGACTTCAATGGCAGTGAEST: gi|193313409|gb|FK278692.1|FK278692
genomic: TCTCCGCATTCCCCTAGATCTGCTTCTTCCTCATTGCTCTGTGAATGCAAgtgagctccg ... tgaggtgcagGCTAGGTGTCGCTGGGACTTCAATGGCAGTGA
EST: TCTCCGCATTCCCCTAGATCTGCTTCTTCCTCATTGCTCTGTGAATGCAA GCTAGGTGTCGCTGGGA
genomic: TCTCCGCATTCCCCTAGATCTGCTTCTTCCTCATTGCTCTGTGAATGCAAgtgagctccg ... tgaggtgcagGCTAGGTGTCGCTGGGA
gcgtttggtggaagcagaaagaattttcaagtcatttttatattttgaggtgcagGCTAGGTGTCGCTGGGACTTCAATGGCAGTGACTGAAGCTCAGAATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAG
aaagaattttcaagtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctactttcttgatcttcgtagaagagaagaaatgtttctctgtgcgtttggtggaagcagaaagaattttcaagtcatttttatattttgaggtgcagGCTAGGTGTCGCTGGGACTTCAATGGCAGTGACTGAAGCTCAGAATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - agaagaaa
- - - - - - - - - - - - - - - - - - - - tctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - tggtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaagaa