1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcacataatccatcgtacatggaattagttctcaaagattttgcatgttagctcgataattttacctaaatgtgtccgtatttaatgttttggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG
species | Glycine max |
transcript | GLYMA14G00760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|7478350|gb|AW666230.1|AW666230
genomic: TTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: ACGAGCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|9986217|gb|BE660325.1|BE660325
genomic: ACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: GACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|19269211|gb|BM885467.1|BM885467
genomic: GACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: CGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|19935544|gb|BQ080482.1|BQ080482
genomic: CGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: CCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|120491397|gb|EH219564.1|EH219564
genomic: CCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: CTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|192312109|gb|FK003872.1|FK003872
genomic: CTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|192317815|gb|FK009407.1|FK009407
genomic: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|192312110|gb|FK003873.1|FK003873
genomic: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|7233754|gb|AW569097.1|AW569097
genomic: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: GATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|192302972|gb|FG996988.1|FG996988
genomic: GATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCTTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCEST: gi|19345910|gb|BM890790.1|BM890790
genomic: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: CGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: CGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
tgttagctcgataattttacctaaatgtgtccgtatttaatgttttggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG
ataattttacctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacataatccatcgtacatggaattagttctcaaagattttgcatgttagctcgataattttacctaaatgtgtccgtatttaatgttttggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTCAATCAAGCCAAGAG
- - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtcc