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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtaattcctctctcacttgatgtgtttttatgttttcatctacactttcacttttttttataaaaaaaaaaactttctttcttttggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTACTTGGATGGCAG

Basic information

species Glycine max
transcript GLYMA14G00640.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00640.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G61520.3 (Arabidopsis thaliana), 3'ss of exon 2
gtctgtaattcctctctcacttgatgtgtttttatgttttcatctacactttcacttttttttataaaaaaaaa----aactttctttc---ttttggtgtt-cagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTACTTGGATGGCAG
                  || |||   || | |||  |||||   |    |    || | | | ||   || ||    | |||  |||    ||||||| || ||||||||| |  ||||||| ||||||||||| |||  ||| ||||| || ||||||||||||||
----------------gtacatgaca-gtctctattctttcacagatctctctctttctctatgtactgaataatctgatcttgattttgtgttttggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730336|gb|BM525821.1|BM525821
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|22540092|gb|BU089935.1|BU089935
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|23053005|gb|BU577496.1|BU577496
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|5760749|gb|AI966112.1|AI966112
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTATGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|27446117|gb|CA953240.1|CA953240
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|7796629|gb|AW782026.1|AW782026
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|13125159|gb|BG315729.1|BG315729
EST:     CAAGAANAGCCTTCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|6667168|gb|AW278627.1|AW278627
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|15589895|gb|BI674511.1|BI674511
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAATGTTTTTTCAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|5342394|gb|AI794678.1|AI794678
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|6454699|gb|AW185382.1|AW185382
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCANAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|23057419|gb|BU578093.1|BU578093
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCATAC-TATCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|13562989|gb|BG551209.1|BG551209
EST:     CAAGAAAAGCCTTCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTCGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|7691859|gb|AW759978.1|AW759978
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|192332350|gb|FK026015.1|FK026015
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|9902717|gb|BE611685.1|BE611685
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|17152899|gb|BM142832.1|BM142832
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGTTTCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|27426573|gb|CA938093.1|CA938093
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|7926526|gb|AW832552.1|AW832552
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|12489499|gb|BG043021.1|BG043021
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|8669807|gb|BE190914.1|BE190914
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|9258889|gb|BE347036.1|BE347036
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|7029674|gb|AW459457.1|AW459457
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|11412114|gb|BF424125.1|BF424125
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|13125817|gb|BG316387.1|BG316387
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|209697676|gb|BW655577.1|BW655577
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|19053400|gb|BM732067.1|BM732067
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|22541673|gb|BU091516.1|BU091516
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCANAGCANAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|11412800|gb|BF424811.1|BF424811
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|13312843|gb|BG406494.1|BG406494
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|13311354|gb|BG405005.1|BG405005
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|23732598|gb|BU764464.1|BU764464
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|9258305|gb|BE346452.1|BE346452
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|10235201|gb|BE804148.1|BE804148
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|6134268|gb|AW132661.1|AW132661
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|10235114|gb|BE804002.1|BE804002
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|5606975|gb|AI901073.1|AI901073
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|10844626|gb|BF067796.1|BF067796
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGANCCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTA
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGA-CCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTA
EST: gi|20498590|gb|BQ273520.1|BQ273520
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|22541871|gb|BU091714.1|BU091714
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|5677942|gb|AI939072.1|AI939072
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|31561249|gb|CD487087.1|CD487087
EST:     CCAGAAAAGCCTCCTTTC-TG-TAAGGCAGCTGCTACTCCCCCTGTCAAG                         CANAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTA
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCA-AGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTA
EST: gi|13125743|gb|BG316313.1|BG316313
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|20814917|gb|BQ299395.1|BQ299395
EST:     CCAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|213588699|gb|DB957693.1|DB957693
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|213596598|gb|DB958211.1|DB958211
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|15287238|gb|BI471129.1|BI471129
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|7693302|gb|AW761396.1|AW761396
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|9258975|gb|BE347122.1|BE347122
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|15200124|gb|BI424185.1|BI424185
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
EST: gi|209710535|gb|BW662071.1|BW662071
EST:     CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAG                         CAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC
genomic: CAAGAAAAGCCTCCTTTCTTGTTAAGGCAGCTGCTACTCCCCCTGTCAAGgtctgtaatt ... tggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacactttcacttttttttataaaaaaaaaaactttctttcttttggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTACTTGGATGGCAG
                                 ctttctttcttttggt  CT-rich tract
      tttcacttttttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgtaattcctctctcacttgatgtgtttttatgttttcatctacactttcacttttttttataaaaaaaaaaactttctttcttttggtgttcagCAAGGATCAGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCCTACTTGGATGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG