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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttccccctttcccttcctttttatttccctctcctctcctatctcatatctctttcttcttttcctagGGATGGGTCTTTTTCTTCACCTTATTGGGGATTACTCCTTTGGCAGAACGCCTCGGTTATGCTACCGA

Basic information

species Glycine max
transcript GLYMA13G44960.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208177936|gb|GD975677.1|GD975677
EST:     TTCCCTTTGGTCCATTGGCCATTCTCCTACATTATCTAATTGGACACCAT                         GGATGGGTCTTTT-CTTTCACCT-ATTGGG
genomic: TTCCCTTTGGTCCATTGGCCATTCTCCTACATTATCTAACTGGACACCATgtatttttcc ... cttttcctagGGATGGGTCTTTTTCTT-CACCTTATTGGG
EST: gi|10848150|gb|BF070698.1|BF070698
EST:     TTCCCTTTGGTCCATTGGCCATTCTCCTACATTATCTAACTGGACACCAT                         GGATGGGTCTTTTTCTTCACCTTATTGGGGATTACTCCTTTGGCAGAACGC
genomic: TTCCCTTTGGTCCATTGGCCATTCTCCTACATTATCTAACTGGACACCATgtatttttcc ... cttttcctagGGATGGGTCTTTTTCTTCACCTTATTGGGGATTACTCCTTTGGCAGAACGC
EST: gi|213618132|gb|DB965289.1|DB965289
EST:     TTCCCTTTGGTCCATTGGCCATTCTCCTACATTATCTAACTGGACACCAT                         GGATGGGTCTTTTTCTTCACCTTATTGGGGATTACTCCTTTGGCAGAACGC
genomic: TTCCCTTTGGTCCATTGGCCATTCTCCTACATTATCTAACTGGACACCATgtatttttcc ... cttttcctagGGATGGGTCTTTTTCTTCACCTTATTGGGGATTACTCCTTTGGCAGAACGC
EST: gi|8670423|gb|BE191530.1|BE191530
EST:     TTCCCTTTGGTCCATTGGCCATTCTCCTACATTATCTAACTGGACACCAT                         GGATGGGTCTNTNTCTTCACCTTATTGGGGATTACTCCTTTGGCAGAACGC
genomic: TTCCCTTTGGTCCATTGGCCATTCTCCTACATTATCTAACTGGACACCATgtatttttcc ... cttttcctagGGATGGGTCTTTTTCTTCACCTTATTGGGGATTACTCCTTTGGCAGAACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctttttatttccctctcctctcctatctcatatctctttcttcttttcctagGGATGGGTCTTTTTCTTCACCTTATTGGGGATTACTCCTTTGGCAGAACGCCTCGGTTATGCTACCGA
          tttccctctcctctcc  CT-rich tract
 ttttattt  TA-rich tract