1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcagtcatatgatctcattcccaacccaattctgctttttaatttcattcttccaaatcctatgcatttcttaattgtgatgttttatcttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGGTAAGGTTTTGAAAGATG
species | Glycine max |
transcript | GLYMA13G44910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACEST: gi|192315478|gb|FK007796.1|FK007796
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACEST: gi|298173138|gb|HO020122.1|HO020122
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: AGACTCTGAAAGGCAGCCACTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACEST: gi|193710246|gb|FK645506.1|FK645506
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAAEST: gi|192315477|gb|FK007795.1|FK007795
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAA
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACEST: gi|298191541|gb|HO039020.1|HO039020
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACEST: gi|193476729|gb|FK439562.1|FK439562
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACEST: gi|193323635|gb|FK290487.1|FK290487
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGAC
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACEST: gi|192307602|gb|FG999641.1|FG999641
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
tcattcttccaaatcctatgcatttcttaattgtgatgttttatcttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGGTAAGGTTTTGAAAGATG
tcttaat putative branch site (score: 3)
ttttatcttcacctc putative PPT
atttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcatatgatctcattcccaacccaattctgctttttaatttcattcttccaaatcctatgcatttcttaattgtgatgttttatcttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGGTAAGGTTTTGAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG