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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcattctattcactaactcaatttcgtcttttatgaaaaacaataaatataaatttatgtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGACTAAACAAAGATCTCTCCTATTCCAG

Basic information

species Glycine max
transcript GLYMA13G44430.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591623|gb|DB968147.1|DB968147
EST:     CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAG                         TGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
genomic: CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAGgtttcattct ... gtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
EST: gi|213611389|gb|DB972762.1|DB972762
EST:     CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAG                         TGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
genomic: CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAGgtttcattct ... gtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
EST: gi|24205772|gb|BU965025.1|BU965025
EST:     CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAG                         TGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
genomic: CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAGgtttcattct ... gtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
EST: gi|19270221|gb|BM886477.1|BM886477
EST:     CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAG                         TGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
genomic: CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAGgtttcattct ... gtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
EST: gi|213611714|gb|DB960642.1|DB960642
EST:     CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAG                         TGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
genomic: CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAGgtttcattct ... gtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
EST: gi|6069618|gb|AW099277.1|AW099277
EST:     CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAG                         TGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
genomic: CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAGgtttcattct ... gtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
EST: gi|213595326|gb|DB966506.1|DB966506
EST:     CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAG                         TGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA
genomic: CCCCGCGCAGCCCCAACCTCACAAACGCAAAGTCACTCTTCGAAAAACAGgtttcattct ... gtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactcaatttcgtcttttatgaaaaacaataaatataaatttatgtgcttgcagTGAAGATTGGACGACCTGGGTACCGTGTCACCAAGCAGTATGACCCGGAGACTAAACAAAGATCTCTCCTATTCCAG
 cactaac  putative branch site (score: 1)
      aatttcgtcttttatg  TA-rich tract