Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttagatttgtagtgtgtattagtacatgcgttttgaggagaaaggggttttgcaacgttctttttctttgcattgttttgggctccagaatttctcctctgacaattttatttttttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG

Basic information

species Glycine max
transcript GLYMA13G42480.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207760947|gb|GD731988.1|GD731988
EST:     AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
EST: gi|207780186|gb|GD753115.1|GD753115
EST:     ATGATGAGCACGTAAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: ATGATGAGCACGT-AAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
EST: gi|24136566|gb|BU927076.1|BU927076
EST:     AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
EST: gi|208311413|gb|GE108621.1|GE108621
EST:     AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
EST: gi|208145407|gb|GD941842.1|GD941842
EST:     AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgttttgggctccagaatttctcctctgacaattttatttttttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
                           ctctgac  putative branch site (score: 3)
                                    ttttatttttttgtct  putative PPT
                                acaattttattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagttagatttgtagtgtgtattagtacatgcgttttgaggagaaaggggttttgcaacgttctttttctttgcattgttttgggctccagaatttctcctctgacaattttatttttttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA