1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctattttgtttttaaatttctatatatgaactatgaagctttttggaattttttgtgtctcgtttgattaatttgtttggcttgttcgtgctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
species | Glycine max |
transcript | GLYMA13G42250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGGATTTCAAGGGCCGAAGAGCCGGCATCATCAAAGCTCTTACCACCG ATGTTGAAGATTTCTACAGCCAATGTGATCCTGEST: gi|151396879|gb|EV266752.1|EV266752
genomic: CGAGGATTTCAAGGGCCGAAGAGCCGGCATCATCAAAGCTCTTACCACCGgtaacgtttt ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: CGAGGATTTCAAGGGCCGAAGAGCCGGCATCATCAAAGCTCTTACCACCG ATGTTGAAGATTTCTACAGCCAATGTGATCCTGEST: gi|192327672|gb|FK020677.1|FK020677
genomic: CGAGGATTTCAAGGGCCGAAGAGCCGGCATCATCAAAGCTCTTACCACCGgtaacgtttt ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: CGAGGATTTCAAGGGCCGAAGAGCCGGCATCATCAAAGCTCTTACCACCG ATGTTGAAGATTTCTGCAGCCAATGTGATCCTG
genomic: CGAGGATTTCAAGGGCCGAAGAGCCGGCATCATCAAAGCTCTTACCACCGgtaacgtttt ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
ggaattttttgtgtctcgtttgattaatttgtttggcttgttcgtgctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
gattaat putative branch site (score: 3)
tttgattaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctattttgtttttaaatttctatatatgaactatgaagctttttggaattttttgtgtctcgtttgattaatttgtttggcttgttcgtgctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - tatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgtt