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gtacacaatttcacttacatagcttcaacattgttatttcattttcaattggttatttatttatttatttatgccagttccagctcttgatgaaagcttatcatcagttatttatttgttatcgatttgtcttttgaattatagtatttccgttcagtttttgtgtgtgtcgttgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAG
species | Glycine max |
transcript | GLYMA13G41580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCG GTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCEST: gi|298174471|gb|HO014616.1|HO014616
genomic: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGgtacacaatt ... tgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGC
EST: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCG GTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCEST: gi|192300198|gb|FG989320.1|FG989320
genomic: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGgtacacaatt ... tgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGC
EST: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCG GTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCEST: gi|213617692|gb|DB967222.1|DB967222
genomic: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGgtacacaatt ... tgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGC
EST: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCG GTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCEST: gi|298198295|gb|HO039834.1|HO039834
genomic: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGgtacacaatt ... tgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGC
EST: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCG GTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTAAAGATGCTTGGGCEST: gi|298167335|gb|HO010774.1|HO010774
genomic: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGgtacacaatt ... tgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGC
EST: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCG GTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGC
genomic: TGCCGTAGCTCTTGCTCTTTCACTTGTTGGTGGTGTCAGCACTTCTATCGgtacacaatt ... tgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGC
gtcttttgaattatagtatttccgttcagtttttgtgtgtgtcgttgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAG
ttgaattatagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacaatttcacttacatagcttcaacattgttatttcattttcaattggttatttatttatttatttatgccagttccagctcttgatgaaagcttatcatcagttatttatttgttatcgatttgtcttttgaattatagtatttccgttcagtttttgtgtgtgtcgttgtgaaacagGTGCACTTTTTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG