Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttattatattttattatattatattacccccttttctctgcaattagggttccaagtttcaaaattataataataatttctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATT

Basic information

species Glycine max
transcript GLYMA13G41410.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41410.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g48030.1 (Oryza sativa), 3'ss of exon 1
gttcgttattatat---tttattatattatattacccccttttctctgcaattagggttccaagtttcaaaattataataataatttctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATT
||||||     |     | |||         |  |     ||||||      |||  | ||  |  | |     |  | |   |  ||    | |||  | ||| | |||| ||   | ||||| ||||  || || |||||||||||| |||| ||||||||||| ||||||||||| || |||   ||||| | 
gttcgtctccttccccatctatcgatccgattcgctttgctttctcaaaccctagattgccttgaattat--ccaccaaatccaaatccaacacagGCGGCTTCTCCGAGACGCGCGAGGGCGAGGTTAGGTTCCCCGAGATCAGCACCCCCATCCTCGAGAAGATCTGCCAGTACTTCTACTGGTCGCTCCACTA

upper sequence: GLYMA13G41410.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g05560.t01 (Vitis vinifera), 3'ss of exon 1
gttcgttattatattttattatatt-atattacccccttttctctgcaattagg-gttccaagtttcaaaatta--taataataatttctttgat-------agGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATT
      ||| | |||||  | ||||  | |||    | |||     |||   |  |||   | |||   | | |  |   | ||  || |||| |       |||||| || || || ||| | || || ||||| || || || ||||| |||||||||||||| |||||||| |||||||| || || |||  ||| |||||
----tatatgaaattttggtttatttgtcttaatttcctttgcaaccaaacggttgtttggaatttgggagtgagttctgactaggttttttggtcggcttcagGGAGCTTTGCGGAAAGGGAACATGGAGAAGTCACTTTCCCGGAGATAAGCACCACCATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346594|gb|BM891474.1|BM891474
EST:     CAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: CAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|209716404|gb|BW657499.1|BW657499
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|213615147|gb|DB963359.1|DB963359
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|209704051|gb|BW673651.1|BW673651
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|16276001|gb|BI941626.1|BI941626
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|31465164|gb|CD407192.1|CD407192
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATTACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|298167118|gb|HO010557.1|HO010557
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|24205228|gb|BU964481.1|BU964481
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|192302178|gb|FG996600.1|FG996600
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|31456662|gb|CD398690.1|CD398690
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|7639957|gb|AW734268.1|AW734268
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|192323451|gb|FK017092.1|FK017092
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|31467068|gb|CD409096.1|CD409096
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|21602717|gb|BQ613048.1|BQ613048
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|151407442|gb|EV277257.1|EV277257
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|209704052|gb|BW673652.1|BW673652
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|208288809|gb|GE086614.1|GE086614
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATACTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTT-CCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|213603156|gb|DB981024.1|DB981024
EST:     AGAAGCTGCAATTGTTTCACAGACCATACATAACATGCTTACTGCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|19270875|gb|BM887131.1|BM887131
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|151394522|gb|EV264393.1|EV264393
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
EST: gi|298175559|gb|HO018270.1|HO018270
EST:     AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAG                         GGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA
genomic: AGAAGCTGCAATGGTTTCACAGACCATACATAACATGCTTACTTCTCCAGgttcgttatt ... tctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctctgcaattagggttccaagtttcaaaattataataataatttctttgatagGGAGTTTCGCTGAGAGGCAGCACGGCGAAGTTACCTTTCCTGAGATCAGCACCACCATTCTCGAGAAGATTTGCCAGTACTTTTATTGGCATCTCCAATT
                                           tttcttt  CT-rich tract
                    aagtttcaaaattata  TA-rich tract