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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttcgtctctcatcgcccaaaaacacaactttatttcattcatgtgtcatacattgttgcaatgaataatggattgtaccaatactgaaattttttttatttttatatttatttagATTAGAGAAGATGGGTGCTCTTGAAGTTGGTAAAGTGATTCATGGACACCAGGTTTGGCGGCTCTTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCAC

Basic information

species Glycine max
transcript GLYMA13G41170.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41170.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g04890.t01 (Vitis vinifera), 3'ss of exon 1
gtgagttcttcgtctctcatcgcccaaaaacacaactttatt-tcattcatgtgtcatacattgttgcaatgaataatggattgtaccaatactgaaattttttttatttttatatttatttagATTAGAGAAGATGGGTGCTCTTGAAGTTGGTAAAGTGATTCATGGACACCAGGTTTGGCGGCTCTTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCAC
            | || ||| |  |||         |  ||| | |   |  ||| | | || |||||| ||||    ||||  || | |  ||  |||| | |           ||| |  ||  ||||||||||||||||||| |||||   ||| ||| | ||| |||| ||||||||||| ||  |||||||||||||| | || | ||||||  | || 
-----------atgtcacatggagcaatcttctgtttaaattattacgaagatgtgaga-atagttgca-tgaa---gggatgatatctaacctacaattctct--------gcttttgtccagCCTAGAGAAGATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAGGTTTGGCGTCTGATCTCTTGTATATGGCTACATGCTGGGGTGTTCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaataatggattgtaccaatactgaaattttttttatttttatatttatttagATTAGAGAAGATGGGTGCTCTTGAAGTTGGTAAAGTGATTCATGGACACCAGGTTTGGCGGCTCTTCTCTTGTATATGGTTGCACGGTGGGGTTGTTCAC
                                              tttattt  CT-rich tract
               taccaatactgaaatt  TA-rich tract