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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacccaatcaaacccctttctctctatccctcttagcgtggattttccgcagtcttctgattcatcttccctttgatgcagATCTTTGCAAGAACCCCGTCGATGGCTTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTGACTATAATTGGACCTCCCGATACTCT

Basic information

species Glycine max
transcript GLYMA13G40990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 1
---gtcacccaatc--aaacccctttctctctatccc--tcttagcgtggattttccgcagtcttctgattcatcttccctttgatgcagATCTTTGCAAGAACCCCGTCGATGGCTTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTGACTATAATTGGACCTCCCGATACTCT
      | |||||   ||| | |||  |    | | |  | || | | |||||      |  |||||  ||  | |   | ||  |||||||||||| || |||||||| |||||||| |||||||||||||||||||| | ||| || |||||||||||||| || || ||||||||||||||||||||
gtaacgatccaattttaaatctcttcgttaagaacaccgttttggagcggattcg----aaacttcttttttttttattcatt--tgcagATCTTTGTAAAAACCCCGTTGATGGCTTCTCCGCCGGTTTGGTCGACGAGAGCAATATCTTTGAATGGAGTGTCACCATTATTGGACCTCCCGATACTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667725|gb|AW279176.1|AW279176
EST:     AGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAG                         ATCTTTGCAAGAACCCCGTCGATGGCTTTTCCGCCGGTTTGGTCGACGAAA
genomic: AGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGgtcacccaat ... tttgatgcagATCTTTGCAAGAACCCCGTCGATGGCTTTTCCGCCGGTTTGGTCGACGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctcttagcgtggattttccgcagtcttctgattcatcttccctttgatgcagATCTTTGCAAGAACCCCGTCGATGGCTTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTGACTATAATTGGACCTCCCGATACTCT
                          tcttctgattcatctt  CT-rich tract
               atttt  TA-rich tract