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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacactatttcaattcatgcttgtctttgccaatattctaaagtttgaattttcatcgcaacagGTTAGTTGGGATGAGCCTGATTTGCTACATAATGTGAAGCGAGTGAGCCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAATCATCCATCTGGCAGCCT

Basic information

species Glycine max
transcript GLYMA13G40030.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997003|gb|CF808592.1|CF808592
EST:     AGGTTCTTGATCCTATTCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAG                         GTTACTTGGGATGAGCCTGATTTGCTACATACTGTGAAGCGAGTGAGCCCA
genomic: AGGTTCTTGATCCTATTCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAGgtacacacta ... atcgcaacagGTTAGTTGGGATGAGCCTGATTTGCTACATAATGTGAAGCGAGTGAGCCCA
EST: gi|5342371|gb|AI794655.1|AI794655
EST:     AGGTTCTTGATCCTATTCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAG                         GTTAGTTGGGATGAGCCTGATTTGCTACATAATGTGAAGCGAGTGAGCCCA
genomic: AGGTTCTTGATCCTATTCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAGgtacacacta ... atcgcaacagGTTAGTTGGGATGAGCCTGATTTGCTACATAATGTGAAGCGAGTGAGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattcatgcttgtctttgccaatattctaaagtttgaattttcatcgcaacagGTTAGTTGGGATGAGCCTGATTTGCTACATAATGTGAAGCGAGTGAGCCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAATCATCCATCTGGCAGCCT
                          ttctaaa  putative branch site (score: 2)
                                        ttttcatc  putative PPT
                      aatattctaaagtttg  TA-rich tract