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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttgcgtctcgattgtttgcgtttggctgagtcggtaattggattgtgtttcgtttgaattttgagaactaacggttcgtttggttcgtggattgcagGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAG

Basic information

species Glycine max
transcript GLYMA13G38980.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38980.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 3'ss of exon 1
----------------------------gtgcgtttg-cgtctcgat--tgtttgcgtttggctgagtc--ggtaattggattgtgtttcgtttgaattttgagaactaacggttcgtttggttcgtggattgcagGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAG
                             |   |||  |  || |||     ||  ||||   |       | | |   | |||  |||  | | ||| ||    || |    ||  | |   | |||     |||||| ||||||||||||||| |||| ||| ||||||| ||||| ||| | |  |||||||| ||||||
gtgagtggcatagttctattttattttcatctttttaacaacttgataacacttatgtttcctttcactaagatgaagagtttgattttgctgttaatattagtcaccatatatttatatatgttgtgttgcacagGTATGTGTTGAAGAAAATCCGGCTTGCGAGGCAGACAGAGCGTTGCCGCAAGTCTGCTCACCAAGAG

upper sequence: GLYMA13G38980.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ20709 (Selaginella moellendorffii), 3'ss of exon 1
gtgcgtttgcgtctcgattgtttgcgtttggctgagtcggtaattggattgtgtttcgtttgaattttgagaactaacggttcgtttggttcgtggattgcagGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAG
                             |   | |  |  |||||| |    |||   ||     |||    || | |    ||   ||||     |||||| || |||||||||||||||||||| ||||| ||||||||  | ||||| ||||||||||||||||||
-----------------------------gtgagtgctgagaattggctaagatttttctt----cttgg---ctgatgaagtgt---gttctc---ttgcagATATGTGTTGAAGAAAATCAGGCTTGCGCGACAGACTGATAGGTGCAGGAGATCTGCTCATCAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtttcgtttgaattttgagaactaacggttcgtttggttcgtggattgcagGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAG
                       aactaac  putative branch site (score: 1)
          tttgaatttt  TA-rich tract