1 5' 3' | 2 5' 3' | 3 5' 3' |
...attactcaagacctgttatagacttacagagttatagttgcacttggaatagtttcttcactagttcacttcaatttaattattttatgtcaattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAGCCCACCAATGTGGCTGAAGCAATTGCATCATGGGGCCTGGATTATGTG
species | Glycine max |
transcript | GLYMA13G37570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAEST: gi|37995591|gb|CF807180.1|CF807180
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAEST: gi|33390566|gb|CA853761.1|CA853761
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAEST: gi|7691879|gb|AW759997.1|AW759997
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTGTGTAATGTTAAGACATCCAGGACTCCTGCACCACCTGACCCTGATGAEST: gi|120530144|gb|EH258278.1|EH258278
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAEST: gi|120530253|gb|EH258387.1|EH258387
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAEST: gi|37996896|gb|CF808485.1|CF808485
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAEST: gi|120530165|gb|EH258299.1|EH258299
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAEST: gi|213597244|gb|DB964373.1|DB964373
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
ggaatagtttcttcactagttcacttcaatttaattattttatgtcaattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAGCCCACCAATGTGGCTGAAGCAATTGCATCATGGGGCCTGGATTATGTG
atttaat putative branch site (score: 4)
ttttc putative PPT
acttcaatttaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attactcaagacctgttatagacttacagagttatagttgcacttggaatagtttcttcactagttcacttcaatttaattattttatgtcaattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGAGCCCACCAATGTGGCTGAAGCAATTGCATCATGGGGCCTGGATTATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - -cctgtta
- - - - - - - - - - - - - - - - - - - tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttca