1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgcaccttcttccaactccttcactcttctcccttcatttcgcccccaaaaccctgatcacttctattttcgagtccatgtcggattgtttgatcatcgatgaccaattgtcagGCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGTCGCCGACCTGCCGCCTCTGGAGCTAGCACTTCGGCAGATCCACCTGCGA
species | Glycine max |
transcript | GLYMA13G36410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGTCAAGATTCTCAACCTCCCCCTCCCCACCGCGACGAAGCTCCTCAG GCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGTEST: gi|207769360|gb|GD741590.1|GD741590
genomic: GCCGTCAAGATTCTCAACCTCCCCCTCCCCACCGCGACGAAGCTCCTCAGgtttgcacct ... caattgtcagGCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGT
EST: GCCGTCAAGATTCTCAACCTCCCCCTCCCCACCGCGACGAAGCTCCTCAG GCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGTEST: gi|298170691|gb|HO019315.1|HO019315
genomic: GCCGTCAAGATTCTCAACCTCCCCCTCCCCACCGCGACGAAGCTCCTCAGgtttgcacct ... caattgtcagGCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGT
EST: GCCGTCAAGATTCTCAACCTCCCCCTCCCCACCGCGACGAAGCTCCTCAG GCTCCGCGGAGAGAAACCGTGGCGCGCGCCCGCCGCCACTCGTCGCATGCGEST: gi|23727933|gb|BU762006.1|BU762006
genomic: GCCGTCAAGATTCTCAACCTCCCCCTCCCCACCGCGACGAAGCTCCTCAGgtttgcacct ... caattgtcagGCTCCGCGGAGAGAAACCGTGGCGCGCG-CCGCCGCCACTCGTCGCATGCG
EST: GCCGTCAAGATTCTCAACCTCCCCCTCCCCACCGCGACGAAGCTCCTCAG GCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGT
genomic: GCCGTCAAGATTCTCAACCTCCCCCTCCCCACCGCGACGAAGCTCCTCAGgtttgcacct ... caattgtcagGCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGT
acttctattttcgagtccatgtcggattgtttgatcatcgatgaccaattgtcagGCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGTCGCCGACCTGCCGCCTCTGGAGCTAGCACTTCGGCAGATCCACCTGCGA
gtttgat putative branch site (score: 5)
tatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcaccttcttccaactccttcactcttctcccttcatttcgcccccaaaaccctgatcacttctattttcgagtccatgtcggattgtttgatcatcgatgaccaattgtcagGCTCCGCGGAGAGAAACCGTGGCGCGCGCCGCCGCCACTCGTCGCATGCGTCGCCGACCTGCCGCCTCTGGAGCTAGCACTTCGGCAGATCCACCTGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT