1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttaaatgaaggctctgcatgctttgttgctattcctatgacctgtgcatttttccatgacatgataagtattaacgtgctttttggttcatattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG
species | Glycine max |
transcript | GLYMA13G35590.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|209721139|gb|BW665696.1|BW665696
genomic: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|213588681|gb|DB957689.1|DB957689
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|6502066|gb|AW203439.1|AW203439
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|213611688|gb|DB969076.1|DB969076
genomic: GAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|192305243|gb|FG993981.1|FG993981
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|209711827|gb|BW674087.1|BW674087
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|213608827|gb|DB957191.1|DB957191
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|298195414|gb|HO039245.1|HO039245
genomic: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|254332683|gb|GR844053.1|GR844053
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|193347242|gb|FK311462.1|FK311462
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|8284697|gb|BE022239.1|BE022239
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|192318939|gb|FK006835.1|FK006835
genomic: GGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|11412751|gb|BF424762.1|BF424762
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|9440322|gb|BE440829.1|BE440829
genomic: GTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: AAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|192316655|gb|FK006834.1|FK006834
genomic: AAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|213614228|gb|DB956812.1|DB956812
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|213601355|gb|DB956675.1|DB956675
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|298183338|gb|HO028551.1|HO028551
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|254319372|gb|GR828992.1|GR828992
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: CCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|193374315|gb|FK339295.1|FK339295
genomic: CCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: TCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCEST: gi|298185362|gb|HO030575.1|HO030575
genomic: TCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
gtgcatttttccatgacatgataagtattaacgtgctttttggttcatattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG
tattaac putative branch site (score: 1)
atgataagtattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaaatgaaggctctgcatgctttgttgctattcctatgacctgtgcatttttccatgacatgataagtattaacgtgctttttggttcatattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - -aatgaag
- - - - - - -ctctgca
- - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - -tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttt