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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatcaaatcgctcacccatctccatttttttttaagttaattactttgttctaaattgaatagatttgattgattaattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACAGGAAATACCCGAACGGGTCTCGACCCAACAGAGTAGCTGGGTCGGGTTA

Basic information

species Glycine max
transcript GLYMA13G35550.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35550.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv19s0014g03290.t01 (Vitis vinifera), 3'ss of exon 1
gtaattatcaaatcgctcacccatctccatttttttttaagttaattactttgttctaaattgaatagatttgattgattaattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACAGGAAATACCCGAACGGGTCTCGACCCAACAGAGTAGCTGGGTCGGGTTA
|| | |||  | |||   |||    |   || |  || || ||   |   |||||    ||         || ||| | |  || |||||||||||| || || || || |||||||||||||||||||| ||||||||  |||| ||||| || |||||  ||||||| || || |||||||| || ||
gtgagtattgattcgaaaacctgcgtt--ttctgcttcaatttggat---ttgtttctgatca-------tttatttacttgttctgcagGTAAAGCTATATTTGGAGAGAAAGAGTGGTACTTTTTCAGTCCCAGAGATCGGAAGTACCCAAATGGGTCCAGACCCAATAGGGTTGCTGGGTCTGGGTA

upper sequence: GLYMA13G35550.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S259_67V6.1 (Physcomitrella patens), 3'ss of exon 1
-----gtaat-tatcaaatcg-ctcacccatctccatttttttttaagttaattactttgttctaaattgaatagatttgattgattaattt----tgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACAGGAAATACCCGAACGGGTCTCGACCCAACAGAGTAGCTGGGTCGGGTTA
     | ||  || || | || |  ||  || | |      | |  |     | |      | |||||| || ||| | ||||   || |||    |||||| || || ||||| || |||  ||||||||| ||||||||||| ||||||||||||||||| || ||  |||| || ||| |||  || |  || || ||
ttgttgaaacatagcagagcggcctactgattttccgggaatctgtaaaagttcaagagcgtataaattaaa-agaatcgattctctactttgatttgcagGCAAGGCTATTTTTGGAGAAGGAGAGTGGTATTTTTTCAGCCCAAGAGACAGGAAATACCCAAATGGAGCTCGCCCTAACCGAGCTGCAGCTTCCGGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339905|gb|GR858030.1|GR858030
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|37997645|gb|CF809234.1|CF809234
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|151400077|gb|EV269891.1|EV269891
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|13481525|gb|BG510868.1|BG510868
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|254316594|gb|GR828131.1|GR828131
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|14008840|gb|BG725444.1|BG725444
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|192295101|gb|FG986820.1|FG986820
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|22541207|gb|BU091050.1|BU091050
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|254343208|gb|GR856912.1|GR856912
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|37996921|gb|CF808510.1|CF808510
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaagttaattactttgttctaaattgaatagatttgattgattaattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACAGGAAATACCCGAACGGGTCTCGACCCAACAGAGTAGCTGGGTCGGGTTA
                     taaattgaatagattt  TA-rich tract