Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193429112|gb|FK392338.1|FK392338EST: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCG
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCG
EST:
gi|298197820|gb|HO039359.1|HO039359EST: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
EST:
gi|213617855|gb|DB967273.1|DB967273EST: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
EST:
gi|192317077|gb|FK007844.1|FK007844EST: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgggtgttgcgatgattagtgaaaggtgtgttcttttttttgtgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACGTGGCGCGCGTGGAGAAGATCGAACAGGATAGTAGGAACAACGTGAAGGT
ttcttttttttgtgtt CT-rich tract
ttctttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatcgcaagaaacccttttgccttttcagctatccagttgcgtaaacggcctcaaaatcgtttcttttgctgagggaaggggagggaatggtttgaaaccatgtgggtgttgcgatgattagtgaaaggtgtgttcttttttttgtgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACGTGGCGCGCGTGGAGAAGATCGAACAGGATAGTAGGAACAACGTGAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA