1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtttttttttttttactattagttgtttatttcgtattgaataagagaatttgggagggttagaatttgacaatttggttgtgttttgatgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAACTTCAACTTTTTATTTATATCTTGCCCTTACACCAT
species | Glycine max |
transcript | GLYMA13G34470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAG CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAEST: gi|15813642|gb|BI785917.1|BI785917
genomic: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAGgttcgaggtt ... tgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAA
EST: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAG CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAEST: gi|27425370|gb|CA936890.1|CA936890
genomic: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAGgttcgaggtt ... tgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAA
EST: CACACCNGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAG CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAEST: gi|14125194|gb|BG789632.1|BG789632
genomic: CACACC-GGGAAAATAACCTTCCCTGCGTGCCTTAAGCAGgttcgaggtt ... tgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAA
EST: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAG CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAEST: gi|15815539|gb|BI787814.1|BI787814
genomic: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAGgttcgaggtt ... tgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAA
EST: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAG CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAEST: gi|16996623|gb|BM085995.1|BM085995
genomic: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAGgttcgaggtt ... tgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAA
EST: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAG CCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAA
genomic: GCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAGgttcgaggtt ... tgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAA
gagaatttgggagggttagaatttgacaatttggttgtgttttgatgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAACTTCAACTTTTTATTTATATCTTGCCCTTACACCAT
ttttgat putative branch site (score: 4)
ttagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttttttttttttactattagttgtttatttcgtattgaataagagaatttgggagggttagaatttgacaatttggttgtgttttgatgatctgcagCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAACTTCAACTTTTTATTTATATCTTGCCCTTACACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - -gggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtg