1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcactgaaactgtgataatcaattagcacaaatgataatctgtttctgacaaatttgagcctctatgttcaattttggttgctaatttattattttcagAGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAG
species | Glycine max |
transcript | GLYMA13G33920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCTTTTGCTTCTTTCATTCATTTCTACGGCCACCAAACTCAATCAT AGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTCEST: gi|151397360|gb|EV267233.1|EV267233
genomic: TCCCTTTTGCTTCTTTCATTCATTTCTACGGCCACCAAACTCAATCATgtaagctctg ... ttattttcagAGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTC
EST: CTTCCCTTTTGCTTCTTTCATTCATTTCTACGGCCACCAAACTCAATCAT AGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTCEST: gi|10845804|gb|BF068846.1|BF068846
genomic: CTTCCCTTTTGCTTCTTTCATTCATTTCTACGGCCACCAAACTCAATCATgtaagctctg ... ttattttcagAGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTC
EST: CTTCCCTTTTGCTTCTTTCATTCATTTCTACGGCCACCAAACTCAATCAT AGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTCEST: gi|192294635|gb|FG986484.1|FG986484
genomic: CTTCCCTTTTGCTTCTTTCATTCATTTCTACGGCCACCAAACTCAATCATgtaagctctg ... ttattttcagAGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTC
EST: CTTCCCTTTTGCTTCTTTCATTCATTTCTACGGCCACCAAACTCAATCAT AGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTC
genomic: CTTCCCTTTTGCTTCTTTCATTCATTTCTACGGCCACCAAACTCAATCATgtaagctctg ... ttattttcagAGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTC
tctgacaaatttgagcctctatgttcaattttggttgctaatttattattttcagAGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAG
tgctaat putative branch site (score: 2)
ttattttc putative PPT
ttgctaatttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcactgaaactgtgataatcaattagcacaaatgataatctgtttctgacaaatttgagcctctatgttcaattttggttgctaatttattattttcagAGTTTATGGAAGCTGTAGAGGCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAG
- cactgaa
- - - - - - - - - - - - - gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc