Sequence
atgc intronic sequence ATGC exonic sequencegtatgtcaccaaattaaactaaacttaacaaaatggctctctttttttttttttttttgttaatttcaactaataatggttaattttggttcattagGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAAT
Basic information
species | Glycine max |
transcript | GLYMA13G32090.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G32090.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G05100.1 (Arabidopsis thaliana), 3'ss of exon 1
gtatgtcaccaaattaaactaaacttaacaaaatggctctctttttttttttttttttgttaatttcaactaataatggttaattttggttcattagGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAAT
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----gttagtatacgtatcttcattattacattttaatcatactttttttattcgtgaattgtctttttaaagttttgcttgaatcttgactat-agGGTTACAAAGATGTGGTAAGAGTTGTCGTCTCCGGTGGACCAACTATCTCCGACCAGATATTAAGCGTGGAAGATTCTCTTTTGAAGAAGAAGAAACCAT
upper sequence: GLYMA13G32090.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0203g00070.t01 (Vitis vinifera), 3'ss of exon 1
gtatgtcaccaaattaaactaaacttaacaaaatggctctctttttttttttttttttgttaatttcaactaataatggttaattttggttcattagGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAAT
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gtacgtctgccaccaatgattgagtggcctttttg--ttcaggtttgaatatttttttatgggcttagatt--taatgggtg-ttctgcctc--tagGGCTGCAAAGGTGCGGTAAAAGCTGCCGTCTCCGGTGGACTAACTACCTGAGGCCAGATATCAAGAGGGGTCGTTTCTCTTTCGAAGAGGAGGAGACAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19271091|gb|BM887347.1|BM887347EST: CATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTG GGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTAC
genomic: CATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGgtatgtcacc ... ggttcattagGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttttttttttttgttaatttcaactaataatggttaattttggttcattagGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAAT
tttttttttttgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtatgtcaccaaattaaactaaacttaacaaaatggctctctttttttttttttttttgttaatttcaactaataatggttaattttggttcattagGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTACGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAAT
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