1 5' 3' | 2 5' 3' |
...tggctatggtggtgttttgtaaataaaactttctaagcttgattgatccattcatactcacaacatgtttcatttacccttcattttgctattaaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAGTCAAAATGTCTCAATTGTTGCTGAAGAAGATGCTCAAACTCTCTCCGA
species | Glycine max |
transcript | GLYMA13G31850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAG ATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAEST: gi|192323415|gb|FK015301.1|FK015301
genomic: TCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAGgtgaatgttg ... attaaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGA
EST: TCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAG ATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAEST: gi|23061719|gb|BU578475.1|BU578475
genomic: TCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAGgtgaatgttg ... attaaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGA
EST: TCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAG ATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAEST: gi|23731535|gb|BU763897.1|BU763897
genomic: TCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAGgtgaatgttg ... attaaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGA
EST: TCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAG AGATTGGAGTGTTC
genomic: TCATCGTCAGGTTCAGTCCAAGGATGACAATTCTCCGGTTACGGTTGCAGgtgaatgttg ... attaaaacagA--TTGGAGTGTTC
atccattcatactcacaacatgtttcatttacccttcattttgctattaaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAGTCAAAATGTCTCAATTGTTGCTGAAGAAGATGCTCAAACTCTCTCCGA
tactcac putative branch site (score: 1)
attttgctattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggctatggtggtgttttgtaaataaaactttctaagcttgattgatccattcatactcacaacatgtttcatttacccttcattttgctattaaaacagATTGGAGTGTTCAAGCAATTGTCAGCTGGATGTTGTCAGAATGTTTAGGGAGTCAAAATGTCTCAATTGTTGCTGAAGAAGATGCTCAAACTCTCTCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - tggtggt
- - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaca