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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtgtttcttccttttgcttgttttctcgtctttctagctttgttttggtttcggtttcagtgagagattgttgttgttgttgggttgttatcagTGGCCGCTTTGATGTCCATGAAGAGTAAAATGAATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGT

Basic information

species Glycine max
transcript GLYMA13G30050.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30050.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G45780.1 (Arabidopsis thaliana), 3'ss of exon 1
gtttggtgtttcttccttttgcttgttttctcg-tctttctagctttgttttggtttcggtttcagtgagagattgttgttgttgttgggttgttatcagTGGCCGCTTTGATGTCCATGAAGAGTAAAATGAATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGT
                |       || |    | |||||||    |||| |       |||||      ||  |  |   | || ||||||| || | |||||| || || |||||  ||||||  || ||||| ||||||    | ||  ||  ||||||||||||||| || ||||||||||||||||||||||||||
---------------gtgaaaaaagtatcaaagatctttcttttattgtgtaaaaa--ggtttt-----gacttaatccatatttttgggttattgt-agTGGCTGCGTTAATGTCAGTGAAGAACAAGATGAAAGATGAGAAAGAGGTTTTGTCTGGTTGGGATATTAACTCTGTTGATCCTTGTACTTGGAACATGGT

upper sequence: GLYMA13G30050.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0003g01490.t01 (Vitis vinifera), 3'ss of exon 1
gtttggtgtttcttccttttgcttgttttctcgtctttctagctttgttttggtttcggtttcagtgagagattgttgttgttgttgggttgttatcagTGGCCGCTTTGATGTCCATGAAGAGTAAAATGAATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGT
    | |||| | | ||| | ||  |  | || |||||||   | |  |||  | | | | |   |||    |  |  |   | || | |||    ||||||||||||||||| | ||||||| ||| ||||||||||||| | ||||  | ||||| ||||||||||| || |||||||| |||||||||||||||||
----gttgttgccttcttct-ctcatgctatcttctttcttcttcttctttattattgttgttgttgatgtctcttcctcactttttgtttg--gacagTGGCCGCTTTGATGGCAATGAAGAATAAGATGAATGATGAGTCGAATGTGCTTGATGGGTGGGATATTAACTCTGTTGATCCCTGTACTTGGAACATGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttggtttcggtttcagtgagagattgttgttgttgttgggttgttatcagTGGCCGCTTTGATGTCCATGAAGAGTAAAATGAATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGT
                                             ttgttat  TA-rich tract