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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgccaatttctgttcaaaaccatgtttttaagtattctctctattcttatttggtactaatctcaatctgtcacctttgttttttgttttttcttcattttactgtgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGGCTTGTACAACGATGAGTTCTTTGCAGCAACAACCTATTTGGACCAAAGG

Basic information

species Glycine max
transcript GLYMA13G29410.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618482|gb|DB967719.1|DB967719
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213607954|gb|DB963012.1|DB963012
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|192298549|gb|FG989225.1|FG989225
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213595788|gb|DB955936.1|DB955936
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209698390|gb|BW667185.1|BW667185
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|208040422|gb|GD838142.1|GD838142
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|298189781|gb|HO038184.1|HO038184
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|298198269|gb|HO039808.1|HO039808
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209726321|gb|BW680233.1|BW680233
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209729807|gb|BW658612.1|BW658612
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209700550|gb|BW670389.1|BW670389
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209703495|gb|BW683356.1|BW683356
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209720820|gb|BW659514.1|BW659514
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213616531|gb|DB967181.1|DB967181
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213617937|gb|DB957390.1|DB957390
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTG-AACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213592445|gb|DB971615.1|DB971615
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|192301792|gb|FG994444.1|FG994444
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213618128|gb|DB965285.1|DB965285
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213607759|gb|DB959098.1|DB959098
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|254333981|gb|GR848899.1|GR848899
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209711254|gb|BW683829.1|BW683829
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213591483|gb|DB973860.1|DB973860
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213596710|gb|DB964057.1|DB964057
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209716972|gb|BW682296.1|BW682296
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|8283703|gb|BE021262.1|BE021262
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213595592|gb|DB968514.1|DB968514
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209718052|gb|BW671885.1|BW671885
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|254345539|gb|GR851701.1|GR851701
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213587616|gb|DB971339.1|DB971339
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213601117|gb|DB964638.1|DB964638
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213616743|gb|DB971254.1|DB971254
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209710249|gb|BW681111.1|BW681111
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209725541|gb|BW677841.1|BW677841
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209722234|gb|BW651251.1|BW651251
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|151395198|gb|EV265069.1|EV265069
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209720338|gb|BW672157.1|BW672157
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213591392|gb|DB973825.1|DB973825
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|213589477|gb|DB965777.1|DB965777
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209716738|gb|BW662393.1|BW662393
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
EST: gi|209725262|gb|BW672737.1|BW672737
EST:     TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTG                         GAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG
genomic: TCTCACTCTCTCCCTCAACACACCATTGATTTTGGTTTCAGCTTTATTTGgtactgtgcc ... tgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaatctgtcacctttgttttttgttttttcttcattttactgtgctatgcagGAAGAGGGTTGTAACGCTGACGTGAAATTTTTCTGAAGACAAAGATGCAGGCTTGTACAACGATGAGTTCTTTGCAGCAACAACCTATTTGGACCAAAGG
                   ttttttgttttttctt  CT-rich tract
               tttgttttttgttttt  TA-rich tract