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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtttgattacttatcaaatgcagtttctgtattctatagagtttctaattaaataaaaaaggagaaaaaatgagatcacagtttgataatgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG

Basic information

species Glycine max
transcript GLYMA13G29400.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29400.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g00760.t01 (Vitis vinifera), 3'ss of exon 1
-agtttgattacttatcaaatgcagtttctgtattctatagagtt-tctaattaaataaaaaaggagaaaaaatgagatca-cagtttgataatgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG
    ||| ||  || || |    | | | ||| |  |    |||| | |   || ||     |     | | || |  |   |  |  ||  || |    |||||| ||||||| ||||||||    ||||||||||||||||||||||| |||||||||||  ||||| || ||||||| | |
gttcttgtttgtttgtcgagaaaattctatgtctattgactagttatttgcctatattttccattgtcatacatcaacttttctatccgaggattta---cagGTATCTGCTTTAAATGAGGCTGTGCCAGGAAGTGTTAAGTCAGTTTTTAAAGCTTGGGAGCAGCGTTTGAATTCTTCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207726149|gb|GD704237.1|GD704237
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|193350168|gb|FK317830.1|FK317830
EST:     TCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: TCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|207710617|gb|GD691301.1|GD691301
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298178150|gb|HO027533.1|HO027533
EST:     ACGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCCCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298192219|gb|HO036301.1|HO036301
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|193529599|gb|FK486526.1|FK486526
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|193625594|gb|FK574740.1|FK574740
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|151402759|gb|EV272572.1|EV272572
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298189706|gb|HO038109.1|HO038109
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|207734694|gb|GD709257.1|GD709257
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|207766953|gb|GD736915.1|GD736915
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGTCTTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTG-CTTT-GAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCA
EST: gi|298164736|gb|HO014381.1|HO014381
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|21888807|gb|BQ742020.1|BQ742020
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298180957|gb|HO022396.1|HO022396
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298192873|gb|HO033307.1|HO033307
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298167595|gb|HO012858.1|HO012858
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|192294103|gb|FG986192.1|FG986192
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|208199957|gb|GD998630.1|GD998630
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|192300261|gb|FG987838.1|FG987838
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGTTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298171596|gb|HO021188.1|HO021188
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAGCACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|254315527|gb|GR825336.1|GR825336
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298169227|gb|HO020587.1|HO020587
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298189728|gb|HO038131.1|HO038131
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298166356|gb|HO008593.1|HO008593
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298175426|gb|HO015059.1|HO015059
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298179820|gb|HO025035.1|HO025035
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298196871|gb|HO041614.1|HO041614
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|193451629|gb|FK419785.1|FK419785
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|207708645|gb|GD689935.1|GD689935
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298172694|gb|HO019734.1|HO019734
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACCGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|20498002|gb|BQ272932.1|BQ272932
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|151393588|gb|EV263463.1|EV263463
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|208233430|gb|GE033621.1|GE033621
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAACGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298163228|gb|HO011961.1|HO011961
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|254342187|gb|GR853324.1|GR853324
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298183628|gb|HO028841.1|HO028841
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|208136560|gb|GD934158.1|GD934158
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCCAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|207838930|gb|GD813420.1|GD813420
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCGGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|208050403|gb|GD845864.1|GD845864
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|207807095|gb|GD778018.1|GD778018
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|51336638|gb|CO980504.1|CO980504
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|193567750|gb|FK526425.1|FK526425
EST:     TGAACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAGTGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: TGA-CTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|151412116|gb|EV281928.1|EV281928
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|193485935|gb|FK450806.1|FK450806
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
EST: gi|298183208|gb|HO028193.1|HO028193
EST:     ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAG                         GTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA
genomic: ATGACTGTTCCTCTAACTGGTCTCTCTACAAACACATCGACCTCTCCAAGgtttctctct ... tgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaattaaataaaaaaggagaaaaaatgagatcacagtttgataatgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG
     taaataaaaaaggaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtttgattacttatcaaatgcagtttctgtattctatagagtttctaattaaataaaaaaggagaaaaaatgagatcacagtttgataatgttggtcagGTAACTGCTTTGAATGAGGCAAATCCAGGAAGTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - -caaatgc
- - - - - - - - - - - -gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat