1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcaacgtcgtgatatcaccttctgtacatattttattctctagttttatcagatatgtttctctgtagctgtaactccttatctttcattatccatttagATAAATCAAAATCACGAAATGGCGCTGATATTAAGAAGGACACACCGGTTCCAAAGGATGGCCCAACGGCCCATATTGCTGCACAAACATTTACATTCCG
species | Glycine max |
transcript | GLYMA13G28730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCTTCTGTTGTTCCTCAGTCTCACCTCCCCAGCAGGGTTAACTCAG ATAAATCAAAATCACGAAATGGCGCTGATATTAAGAAGGACACACCGGTTC
genomic: AGCTGCTTCTGTTGTTCCTCAGTCTCACCTCCCCAGCAGGGTTAACTCAGgtctgcctcc ... atccatttagATAAATCAAAATCACGAAATGGCGCTGATATTAAGAAGGACACACCGGTTC
ttatcagatatgtttctctgtagctgtaactccttatctttcattatccatttagATAAATCAAAATCACGAAATGGCGCTGATATTAAGAAGGACACACCGGTTCCAAAGGATGGCCCAACGGCCCATATTGCTGCACAAACATTTACATTCCG
ctgtaac putative branch site (score: 3)
tccattt putative PPT
ttatctttcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaacgtcgtgatatcaccttctgtacatattttattctctagttttatcagatatgtttctctgtagctgtaactccttatctttcattatccatttagATAAATCAAAATCACGAAATGGCGCTGATATTAAGAAGGACACACCGGTTCCAAAGGATGGCCCAACGGCCCATATTGCTGCACAAACATTTACATTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - -caccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagctg