1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttgaactttccttttctttttgtgggtgtttgttattgcattgagattctctttattgacaagttcagttgattaattttggcttttgttatttggcagGCAGTTCTGCACTGGGGAATACAG
species | Glycine max |
transcript | GLYMA13G26260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAATACAGEST: gi|58025427|gb|CX712168.1|CX712168
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAATACAGEST: gi|298164520|gb|HO014165.1|HO014165
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|151408761|gb|EV278569.1|EV278569
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|298179325|gb|HO027796.1|HO027796
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|298174291|gb|HO017627.1|HO017627
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTAGGGAGTACAGEST: gi|58021016|gb|CX707758.1|CX707758
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAATACAGEST: gi|298170313|gb|HO018937.1|HO018937
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|31561148|gb|CD486986.1|CD486986
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|298180377|gb|HO025578.1|HO025578
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|208029483|gb|GD827899.1|GD827899
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|192333246|gb|FK026127.1|FK026127
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|16348066|gb|BI973661.1|BI973661
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|298172532|gb|HO019572.1|HO019572
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|151393429|gb|EV263304.1|EV263304
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|298183104|gb|HO028367.1|HO028367
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|163923182|gb|EH038294.1|EH038294
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAATACAGEST: gi|209704173|gb|BW664791.1|BW664791
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|58021929|gb|CX708670.1|CX708670
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAGEST: gi|192298333|gb|FG992108.1|FG992108
genomic: AAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
EST: GCCGATATTGCCCCCAAAACTGCCGAGAATTTCAG GCAGTTCTGCACTGGGGAGTACAG
genomic: GCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgt ... tatttggcagGCAGTTCTGCACTGGGGAATACAG
gattctctttattgacaagttcagttgattaattttggcttttgttatttggcagGCAGTTCTGCACTGGGGAATACAG
cttttgtt CT-rich tract
agttgattaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaactttccttttctttttgtgggtgtttgttattgcattgagattctctttattgacaagttcagttgattaattttggcttttgttatttggcagGCAGTTCTGCACTGGGGAATACAG
- - - - - - - - - - ttgtggg
- - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - -tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttttg