Sequence
atgc intronic sequence ATGC exonic sequence...aaagattgaatatttaaaatgtcacttggtaaaggtcaccaaagacaacataaatttctagcatagtttataaggtatattattcgtcatttatatgcagTAATCAGCCAGTAAGAGTATACAACATGATGAAATATGCTGCAATAGCTTGTGGGGATGCTGAGGTTTTCATGAAGTTTGCAAGGGCTGGTTACAAGGAG
Basic information
species | Glycine max |
transcript | GLYMA13G25470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G25470.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G108364_T01 (Zea mays), 3'ss of exon 2
------aaagattgaatatttaaaatgtcacttggtaaaggtcaccaaagacaacataaatttctagcatagtttataaggtatattattcgtcatttatatgcagTAATCAGCCAGTAAGAGTATACAACATGATGAAATATGCTGCAATAGCTTGTGGGGATGCTGAGGTTTTCATGAAGTTTGCAAGGGCTGGTTACAAGGAG
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ctctgcgcgtgtacagcatccaaaatgtgactcttgtatagttgctcaa--ctaggtgttttgattgtactgtttatt---tacatcattttgc-tttgtatccagGAATCAACCTCTGCGCGTGTACAGCATGGTGAAATATGCTGCAATAGCACGAGGCGATGCTGAAATCTTCATGAAATTTGCAAGAGCTGGATACAAAGAG
upper sequence: GLYMA13G25470.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0301g00050.t01 (Vitis vinifera), 3'ss of exon 2
aaagattgaatatttaaaatgtcacttggtaaa-ggtcaccaaagacaacataaatttctagcata---gtttataaggtatattattcgtcatttata-tgcagTAATCAGCCAGTAAGAGTATACAACATGATGAAATATGCTGCAATAGCTTGTGGGGATGCTGAGGTTTTCATGAAGTTTGCAAGGGCTGGTTACAAGGAG
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----aatga-taatgaaaatggcagatagaagataattaaaagaagaaatggaaaacagaaacacatgtgttcattgagtagtttcttttccgtttcaactgcagGAAGCAACCGTTACGTGTATACAGCATGGTGAAGTATGCAGCCATAGCCCGTGGTGATGCAGAGATTTTTATGAAGTTTGCAAGAGCTGGCTACAAGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21888572|gb|BQ741785.1|BQ741785EST: AATTCAAGTCACTCTTTCACTGAAGGACTGGCTCACAGTGTTGGTCTCAG TAATCATTCTGTAAGAGTATACAACATGATGAAATATGCTGCAATAGCTTG
genomic: AATTCAAGTCACTCTTTCACTGAAGGACTGGCTCACAGTGTTGGTCTCAGgttcattttc ... ttatatgcagTAATCAGCCAGTAAGAGTATACAACATGATGAAATATGCTGCAATAGCTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caacataaatttctagcatagtttataaggtatattattcgtcatttatatgcagTAATCAGCCAGTAAGAGTATACAACATGATGAAATATGCTGCAATAGCTTGTGGGGATGCTGAGGTTTTCATGAAGTTTGCAAGGGCTGGTTACAAGGAG
atagtttataaggtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaagattgaatatttaaaatgtcacttggtaaaggtcaccaaagacaacataaatttctagcatagtttataaggtatattattcgtcatttatatgcagTAATCAGCCAGTAAGAGTATACAACATGATGAAATATGCTGCAATAGCTTGTGGGGATGCTGAGGTTTTCATGAAGTTTGCAAGGGCTGGTTACAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - -tgtcact
- - - - - - - - - - - - - - - - - - caccaaa