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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttgtctctgaaccctaattgcttccgtgtttggatatttgtgtgtttgtcgctgaaacatgttcggttttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT

Basic information

species Glycine max
transcript GLYMA13G24630.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 1
------------------------------------------gtgttgtctctgaacc-ctaattgcttcc-gt-gtttggatatttgtgtgtttgtcgctgaaacatgttcggttttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
                                          || | |   | |  |  ||  ||| |||  || |   || |   | ||  ||||| |  |   | || |    |||   |||||||||||| || || || ||||| ||||||||||||||||| || ||||||||||||| ||||||
gtacccatttctcctcctcccctccccgcgggcgacgtggtcgtctcgatccggtccggctggttgtttcttgtagcgcggtttgatctgattttgtggtcgc--cctgatgatgttttgcgcagTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 1
----------------------------gtgttgtctctgaaccctaattgcttccgt--gtttggatatttgtgt----gtttgtcgctgaaacatg-----ttcggttttgctg-cagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
                             |        ||| |      |  |   ||  | || ||| ||| | |    | | |   ||||  | ||     | ||  || | |  ||||||||||| || || || ||||| ||||||||||||||||| || ||||||||||||| ||||||
gtaagacgctcctcgtcgccgttgctggatcccccagatgagctagggattttatggtagggttagatttttttttcgtgggtggcttctgattcgtgtggtttccgccttcgttttcagTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 1
gtgttgtctctgaaccctaattgcttccgtgtttgga--tatttgtgtgtttgtcgc-tgaaacatgttcggttttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
     ||     |  ||    |  | ||  | | |||  | |||||| |  | | |  |   |  ||| ||   || |  ||||||||||| || || ||  |||| |||||||| ||||||||||||||||||||||||| ||||||
-----gtaagctactcccggcttttcccacgataggaggtgtttgtgggaatatagtatctgatctgtgcgcactttc--cagTTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 1
gtgttgtctctgaaccctaattgcttccgtgtttg--gatatttgtgtgtttgtcgc-tgaaacatgttcggttttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
     ||     |  ||       | ||| | | |  | | |||||| |  | | |  |   |  ||| ||   || |  ||||||||||| || || ||  |||| |||||||| ||||||||||||||||||||||||| ||||||
-----gtaagctactcccggcctttcccgcgataggcggtgtttgtgggaatctagtatctgatctgtgcgcactttc--cagTTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G054136_T03 (Zea mays), 3'ss of exon 1
-------gtgttgtctc--tgaaccctaattgcttccg---tgtttggatatttgtg-tgtttgtcg----ctgaaacatgttcggttt---tgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
       |    | | |  ||||    |  | || |||   | |   |  ||  | | ||||||| |    ||   |  || || ||        | ||||||||||| || || ||  |||| |||||||| ||||||||||||||||||||||||| ||||||
gcgcgccgcaacgccaccatgaaggtaagctactcccggcctttcccgcgataggcggtgtttgtgggaatctagtatctgatctgtgcgcactttccagTTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 1
----gtgttgtctctgaaccctaattgcttccgtgtttggatatttgtgtg--tttgtcg-ctgaaacatgttcggtt--ttgctgc-agTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
    |  |   ||| |  |  |||   | ||  |   ||| | |||||| |  | |  || ||||    ||  |  ||  ||||| | |||||||||| || || ||  | || |||||||||||||||||||||||||||||||||| ||| ||
gtaagcttatcctccgcgctgtaa---catcgataggtgg-tgtttgtgggaatctagcgtctgatctgtgcccttttcgttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgt-tgtctctgaaccctaattgcttccgtgtttgg--atatttgtgtgtttgtcgctgaaacatgttcggtttt---gctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
|||  || |   |||  | ||| |  ||    ||||    |||| | || |   | ||| |    | |   ||||    | | ||||||||| |||| ||||| || ||||| |||||||||||||| || ||||| || |||| ||| ||
gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------gtgttgtctctgaaccctaat-tgcttccgtgtt----tggatatttgtgtgttt---gtcgctgaaacatgttcggtttt---gctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
                     |    ||||      ||| | | |  | | | |    |   ||  | | |||||   |||     ||  || | |  ||     |||||| ||||||| || || ||||| || ||||||||||||||| | || ||||||||||||   |||||
gtgagactcttgcacgcttccttccatctccatgttctattgttcgcctgcgctgctctctgtacctctctgtttccggtcttcctaatttggttgcgttcctgactgcagCTCAACATCGCCAACCCCACTACGGGGTGCCAGAAGAAGGTTGAGATCGATGACGACGCTAAGCT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
-----------------------------------------------gtgttgtctctgaaccctaattgcttc---cgtgtttggatatttgtgtgtttgtcgctgaaacatgttcggttttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
                                                ||  ||  | |      ||||  ||    |||| ||| || ||   ||||| |        |  || | | || |   |||| |||| || || ||||||||||| ||||||||||||||| | || ||||||||||||   |||||
gtgtgctgtacgctccgcatattctctctcgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcat-ttgcagtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------gtgttgtctctgaaccctaat-tgct----tccgtgtttg--gatatttgtgtgtt-------tgtcgctgaaacat-gttcggtttt--gctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
                                  ||||  || |  | | | |  |||     | ||  ||    | | | |||| ||        ||||  |  ||  | |||| |||    ||||||| ||||||| || || |||||||| |||||||| |||||| | || ||||||||||||   |||||
gtacacgcatacgggggctccctctgccctcccctgtttcctttccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401349|gb|BM178131.1|BM178131
EST:     CGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208332504|gb|GE126557.1|GE126557
EST:     CGGCGGGATCATCAC-AGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298193160|gb|HO033594.1|HO033594
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298181810|gb|HO025985.1|HO025985
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208127723|gb|GD924881.1|GD924881
EST:     CGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298199594|gb|HO043471.1|HO043471
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|151395180|gb|EV265051.1|EV265051
EST:     ACGCAGCGAGTTTAGGCGCGGCAGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|254321711|gb|GR825028.1|GR825028
EST:     CACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|13181264|gb|BG352613.1|BG352613
EST:     TTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: TTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|151400718|gb|EV270532.1|EV270532
EST:     AGGCGCGGCGGGATCATCACGAGA-TGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|10710672|gb|BF010390.1|BF010390
EST:     ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208227537|gb|GE022762.1|GE022762
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|207701951|gb|GD683503.1|GD683503
EST:     CGGGTATCATCACGAGATTGCAAAAGGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGGG-ATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208306116|gb|GE105805.1|GE105805
EST:     GCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: GCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298187081|gb|HO034230.1|HO034230
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|13789946|gb|BG652537.1|BG652537
EST:     CGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208069774|gb|GD867903.1|GD867903
EST:     TCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: TCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|209707806|gb|BW683702.1|BW683702
EST:     ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|207834771|gb|GD806448.1|GD806448
EST:     AGGCGCGGCGGGATCATCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|151401801|gb|EV271614.1|EV271614
EST:     ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298167226|gb|HO010665.1|HO010665
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|209718263|gb|BW677487.1|BW677487
EST:     ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|16997182|gb|BM086554.1|BM086554
EST:     ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|254346474|gb|GR856196.1|GR856196
EST:     ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|193457350|gb|FK423144.1|FK423144
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298172238|gb|HO021830.1|HO021830
EST:     AGGCGCGGCGGGATCAACACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|192322367|gb|FK014608.1|FK014608
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298186880|gb|HO033979.1|HO033979
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGTGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298182877|gb|HO031612.1|HO031612
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCGCCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|298180288|gb|HO025489.1|HO025489
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298176490|gb|HO026725.1|HO026725
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|151409894|gb|EV279702.1|EV279702
EST:     GCGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|22523471|gb|BU082282.1|BU082282
EST:     TGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: TGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|254327970|gb|GR834935.1|GR834935
EST:     ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298187656|gb|HO034805.1|HO034805
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TCCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|192329629|gb|FK021915.1|FK021915
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|193373433|gb|FK340205.1|FK340205
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|209697660|gb|BW655509.1|BW655509
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208215523|gb|GE015506.1|GE015506
EST:     AGGCGCGGCGGGATCATCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298171153|gb|HO016185.1|HO016185
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAGGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298168655|gb|HO009585.1|HO009585
EST:     AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|18040373|gb|BM308667.1|BM308667
EST:     ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: ACGCAGCGAGTTTAGGCGCGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208025388|gb|GD822876.1|GD822876
EST:     CGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAA
genomic: CGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAA
EST: gi|193646588|gb|FK591311.1|FK591311
EST:     CGGCGGGATCATCACGAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCTCCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGGCGGGATCATCACGAGATTGCAAAATGAAGgtgttgtctc ... tttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgtgtttggatatttgtgtgtttgtcgctgaaacatgttcggttttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT
                                            ttttgct  CT-rich tract
           atatttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgttgtctctgaaccctaattgcttccgtgtttggatatttgtgtgtttgtcgctgaaacatgttcggttttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC