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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgtcattcaattttttcattttttaattattattatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG

Basic information

species Glycine max
transcript GLYMA13G24360.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715702|gb|BW674363.1|BW674363
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|7326908|gb|AW620706.1|AW620706
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|15287940|gb|BI471831.1|BI471831
EST:     CTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|209724251|gb|BW662892.1|BW662892
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|15664239|gb|BI701610.1|BI701610
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|26056377|gb|CA799291.1|CA799291
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|213594399|gb|DB973640.1|DB973640
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|20076102|gb|BQ094885.1|BQ094885
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|31561929|gb|CD487767.1|CD487767
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|120530166|gb|EH258300.1|EH258300
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|209725000|gb|BW659746.1|BW659746
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|20449743|gb|BQ253867.1|BQ253867
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|209710025|gb|BW653532.1|BW653532
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|15338168|gb|BI498832.1|BI498832
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|5760087|gb|AI965450.1|AI965450
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|8404364|gb|BE059998.1|BE059998
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|209707100|gb|BW683287.1|BW683287
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|209721962|gb|BW669348.1|BW669348
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|31560884|gb|CD486722.1|CD486722
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|17023242|gb|BM094276.1|BM094276
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|209706117|gb|BW680861.1|BW680861
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|20449432|gb|BQ253556.1|BQ253556
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: gi|213615016|gb|DB957054.1|DB957054
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG                         AGAAGCAAAGGTTGGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGG
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTG-CTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctcctaactaatgtcattcaattttttcattttttaattattattatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG
           taatgtcattcaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgtcattcaattttttcattttttaattattattatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT