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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcttccgtctcccaatattttcttcttcttcttcttattatcatttttgtgtataaacctcaccttaattactctactcttctctctaattacagttttcaattttgtttcagTGAAATTACTTGCATAGATAGAGCATCATGGCCATGATGAAACGTGCTGCTTCCTCTTCGGTTCGCTCGCTACTTTCCTCATCCTCCACCTTCACCAGAA

Basic information

species Glycine max
transcript GLYMA13G23790.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322348|gb|GR837762.1|GR837762
EST:     ATTAGTTCATCCTTTCCCAAGCCAGCCAAGCGAGGCATGCTCTCAATTTT                         TGAAATTACTTGCATAGATAGAGCATCATGGCCATGATGAAACGTGCTGCT
genomic: ATTAGTTCATCCTTTCCCAAGCCAGCCAAGCGAGGCATGCTCTCAATTTTgtactcttcc ... tttgtttcagTGAAATTACTTGCATAGATAGAGCATCATGGCCATGATGAAACGTGCTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaccttaattactctactcttctctctaattacagttttcaattttgtttcagTGAAATTACTTGCATAGATAGAGCATCATGGCCATGATGAAACGTGCTGCTTCCTCTTCGGTTCGCTCGCTACTTTCCTCATCCTCCACCTTCACCAGAA
                         ctctaat  putative branch site (score: 3)
                                            ttttgtttc  putative PPT
                                     ttttcaattttgttt  TA-rich tract