Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcttattctccacattttctcttccttttctccatttcgtttgatcaatactcattaggcctcgtttggatcttccgttgttttttttgttttcaattgtgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG

Basic information

species Glycine max
transcript GLYMA13G23400.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv11s0118g00680.t01 (Vitis vinifera), 3'ss of exon 1
gtgcgcttattctccacattttctcttccttttctccatttcgtttgatcaatactcattaggcctcgtttggatcttccgttgttttttttgttttcaattgtgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
                ||   ||   || || | ||  | ||  || ||  |||    ||    |   |    | |     | |||||| |   | |      | | |||||||||||||| || |||||||||||||| ||||||||| |  |
--------------gtcaagctcagatc-ttctatcactctccctttatacatatatcttgaaacagctcaaaagcc----tagtttttgtgactctt-----tctattgcagACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208099551|gb|GD897890.1|GD897890
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAA
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCACAAA
EST: gi|207821470|gb|GD790171.1|GD790171
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207827618|gb|GD799581.1|GD799581
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208118230|gb|GD917325.1|GD917325
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207755233|gb|GD729828.1|GD729828
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193712674|gb|FK652315.1|FK652315
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193373384|gb|FK342382.1|FK342382
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208088552|gb|GD887312.1|GD887312
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|298191471|gb|HO038950.1|HO038950
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208058482|gb|GD860599.1|GD860599
EST:     CTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208146504|gb|GD946299.1|GD946299
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207792547|gb|GD763795.1|GD763795
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208216440|gb|GE012484.1|GE012484
EST:     GCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: GCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208336513|gb|GE139579.1|GE139579
EST:     ACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207763326|gb|GD736581.1|GD736581
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208070307|gb|GD869738.1|GD869738
EST:     CTCTTCTCTGCAGCTTTTGCCTAACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTCTTCTCTGCAGCTTTTGCCT-ACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208042915|gb|GD841859.1|GD841859
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGGAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193485379|gb|FK452491.1|FK452491
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193430755|gb|FK392427.1|FK392427
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193444267|gb|FK409747.1|FK409747
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207711162|gb|GD694451.1|GD694451
EST:     CTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193585246|gb|FK540759.1|FK540759
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193439532|gb|FK409907.1|FK409907
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGT
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGT
EST: gi|193307479|gb|FK272481.1|FK272481
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193667528|gb|FK613546.1|FK613546
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193460945|gb|FK425810.1|FK425810
EST:     CCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193650962|gb|FK597569.1|FK597569
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208322659|gb|GE118668.1|GE118668
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207784504|gb|GD757681.1|GD757681
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193733010|gb|FK668675.1|FK668675
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208078161|gb|GD877891.1|GD877891
EST:     CTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193539925|gb|FK496935.1|FK496935
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207713345|gb|GD696742.1|GD696742
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207780616|gb|GD751767.1|GD751767
EST:     CTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207755594|gb|GD730441.1|GD730441
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         AACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagA-CCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193667536|gb|FK613554.1|FK613554
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207807202|gb|GD780407.1|GD780407
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193477734|gb|FK440489.1|FK440489
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207839451|gb|GD813018.1|GD813018
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193458116|gb|FK423240.1|FK423240
EST:     CTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208178499|gb|GD977808.1|GD977808
EST:     CCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208186860|gb|GD983560.1|GD983560
EST:     CTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207841871|gb|GD816303.1|GD816303
EST:     ACTCCTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193555214|gb|FK512187.1|FK512187
EST:     CCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207698858|gb|GD680691.1|GD680691
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAGAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208327061|gb|GE122339.1|GE122339
EST:     CTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208241114|gb|GE043164.1|GE043164
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208288962|gb|GE085367.1|GE085367
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208034007|gb|GD831467.1|GD831467
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193343152|gb|FK305746.1|FK305746
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|254329635|gb|GR839188.1|GR839188
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193548751|gb|FK508292.1|FK508292
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207773026|gb|GD744934.1|GD744934
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193338339|gb|FK305142.1|FK305142
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193492038|gb|FK453454.1|FK453454
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCCGAAGCAACCAAAAGTGTTTATCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207842315|gb|GD814601.1|GD814601
EST:     CTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208173169|gb|GD970682.1|GD970682
EST:     CTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: CTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207767254|gb|GD739666.1|GD739666
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208268175|gb|GE073006.1|GE073006
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|208119387|gb|GD915136.1|GD915136
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193473863|gb|FK443206.1|FK443206
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|207834644|gb|GD805495.1|GD805495
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193646194|gb|FK592597.1|FK592597
EST:     AACTCCCTTCACCATGGCTGAGCAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: AACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
EST: gi|193386579|gb|FK353257.1|FK353257
EST:     ACTCTTCTCTGCAGCTTTTGCCTACAGCTCCCTTCACCATGGCTGAACAA                         ACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
genomic: ACTCTTCTCTGCAGCTTTTGCCTACAACTCCCTTCACCATGGCTGAACAAgtgcgcttat ... tgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggcctcgtttggatcttccgttgttttttttgttttcaattgtgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG
                       ttgttttttttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgcttattctccacattttctcttccttttctccatttcgtttgatcaatactcattaggcctcgtttggatcttccgttgttttttttgttttcaattgtgttttgcagACCGAGAAAGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA