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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtatgaataaatttaacattccagtttcttcttcacttcaaaatattttttatttgaaagcaagccacacaacacaactcagcttcctcatcctcaacaataataatatctttcttgttttgctggcttctcaagatgcggggtttgctttttcagATCCGACGAATCAGGCGACTCGCACACACAACTTGTTTTTCTGGCTTCTCAAAGATACGTCGTTTACCTTTTTCAGATCCGACGAAAAAGGCGAGAACAA

Basic information

species Glycine max
transcript GLYMA13G20370.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773670|gb|BG238597.1|BG238597
EST:     ACACTGCTGAAGCAAAACCAATCTGTAGCAGCTCAATTATCCCCTTCACG                         ATCCGACGAATCAGGCGACTCGCACACACAACTTGTTTTTCTGGCTTCTCA
genomic: ACACTGCTGAAGCAAAACCAATCTGTAGCAGCTCAATTATCCCCTTCACGgtgcgtatga ... gctttttcagATCCGACGAATCAGGCGACTCGCACACACAACTTGTTTTTCTGGCTTCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataatatctttcttgttttgctggcttctcaagatgcggggtttgctttttcagATCCGACGAATCAGGCGACTCGCACACACAACTTGTTTTTCTGGCTTCTCAAAGATACGTCGTTTACCTTTTTCAGATCCGACGAAAAAGGCGAGAACAA
                                          tttgctttttc  CT-rich tract
     tatcttt  TA-rich tract