1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgcccccgcagaattctgcataactcaatttgtgccctaattggtcaacttctcttaaaaatcacggaattagggtattccatgactcttatggtatatggagggaaaatttttgattaattattttgaacttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCAACGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCA
species | Glycine max |
transcript | GLYMA13G20220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCEST: gi|10231727|gb|BE800615.1|BE800615
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCEST: gi|13480377|gb|BG509720.1|BG509720
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCEST: gi|192310402|gb|FK002282.1|FK002282
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCEST: gi|208147077|gb|GD950652.1|GD950652
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCAEST: gi|27424308|gb|CA935828.1|CA935828
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCA
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCEST: gi|7639740|gb|AW734056.1|AW734056
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCEST: gi|13790226|gb|BG652817.1|BG652817
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCTTGGCCTTGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCEST: gi|213591902|gb|DB973439.1|DB973439
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTCGCTTCAG AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
tcttatggtatatggagggaaaatttttgattaattattttgaacttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCAACGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCA
gattaat putative branch site (score: 3)
cttttgt putative PPT
aaaatttttgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcccccgcagaattctgcataactcaatttgtgccctaattggtcaacttctcttaaaaatcacggaattagggtattccatgactcttatggtatatggagggaaaatttttgattaattattttgaacttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCAACGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG