Sequence
atgc intronic sequence ATGC exonic sequence...ttttcttccttttctttttggtgatatatacgtaatactaaattataatgatttagttttatatattttttgttgccataatgtgcatataaatgactagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCCACATGAGTCAAGAGGAATGCATGGAAGCTCTTTCCAAACATGCAAATATCAAACCGGTTATTACCA
Basic information
species | Glycine max |
transcript | GLYMA13G19600.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G19600.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0040g02650.t01 (Vitis vinifera), 3'ss of exon 1
---ttttcttccttttctttttggtgatatatacgtaatactaaattataatgatttagttttatatattttttgttg-ccat-aatgtgcat-ataaatgactagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCCACATGAGTCAAGAGGAATGCATGGAAGCTCTTTCCAAACATGCAAATATCAAACCGGTTATTACCA
| | |||| || ||| | | | || ||| | | || | | | | || || | || ||| ||| || | | ||||||| || |||||||||||||| ||| | ||| | ||||| ||| |||||||||||||| || ||||||||||| | |||||||| || || ||
gtgagcatacctctctcttattccagatcttttcatataactggcctgggtt--ttgaatgtagtcgatgcgatgaagattatgaatacacatgatttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatgatttagttttatatattttttgttgccataatgtgcatataaatgactagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCCACATGAGTCAAGAGGAATGCATGGAAGCTCTTTCCAAACATGCAAATATCAAACCGGTTATTACCA
atttagttttatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttcttccttttctttttggtgatatatacgtaatactaaattataatgatttagttttatatattttttgttgccataatgtgcatataaatgactagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCCACATGAGTCAAGAGGAATGCATGGAAGCTCTTTCCAAACATGCAAATATCAAACCGGTTATTACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- ttcttcc
- - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatat