Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttggtacattgtttttttttttttttaaaggttggtaaataatgtgaaaatacaactatggatctagtgaaaaatattatttattatttcggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAG

Basic information

species Glycine max
transcript GLYMA13G19500.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184004|gb|HO029217.1|HO029217
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|12489759|gb|BG043280.1|BG043280
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|26269126|gb|CA820189.1|CA820189
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|192330021|gb|FK020837.1|FK020837
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|13479768|gb|BG509111.1|BG509111
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|19346407|gb|BM891287.1|BM891287
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|37996937|gb|CF808526.1|CF808526
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|298181507|gb|HO022946.1|HO022946
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|298169347|gb|HO020707.1|HO020707
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|6133848|gb|AW132241.1|AW132241
EST:     TCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|9565429|gb|BE474938.1|BE474938
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|7587913|gb|AW703719.1|AW703719
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|8403914|gb|BE059548.1|BE059548
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|192324146|gb|FK017877.1|FK017877
EST:     -NNNNNNNCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCGATTGAGACCCCAAACAAGGTTTCCAACTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|213593665|gb|DB971687.1|DB971687
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|4396573|gb|AI495570.1|AI495570
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|209719745|gb|BW672120.1|BW672120
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|298178505|gb|HO024240.1|HO024240
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|209701982|gb|BW664582.1|BW664582
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|17154018|gb|BM143951.1|BM143951
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaatacaactatggatctagtgaaaaatattatttattatttcggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAG
                                       ttatttc  CT-rich tract
                 atctagtgaaaaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttggtacattgtttttttttttttttaaaggttggtaaataatgtgaaaatacaactatggatctagtgaaaaatattatttattatttcggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT