1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttggtacattgtttttttttttttttaaaggttggtaaataatgtgaaaatacaactatggatctagtgaaaaatattatttattatttcggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAG
species | Glycine max |
transcript | GLYMA13G19500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|151412335|gb|EV282147.1|EV282147
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAATAGTEST: gi|12489759|gb|BG043280.1|BG043280
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|26269126|gb|CA820189.1|CA820189
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|38193105|gb|CF922311.1|CF922311
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|13479768|gb|BG509111.1|BG509111
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|192308688|gb|FK000078.1|FK000078
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|19346407|gb|BM891287.1|BM891287
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|41146349|gb|CK606560.1|CK606560
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|37996937|gb|CF808526.1|CF808526
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|120494697|gb|EH222864.1|EH222864
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|298181507|gb|HO022946.1|HO022946
genomic: TTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|298169347|gb|HO020707.1|HO020707
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|9565429|gb|BE474938.1|BE474938
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|151410176|gb|EV279991.1|EV279991
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|7587913|gb|AW703719.1|AW703719
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|192309831|gb|FK002943.1|FK002943
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|151411553|gb|EV281364.1|EV281364
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAATAGTEST: gi|192300349|gb|FG987866.1|FG987866
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: CTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|8403914|gb|BE059548.1|BE059548
genomic: CTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|151396440|gb|EV266317.1|EV266317
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|213593665|gb|DB971687.1|DB971687
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|192330021|gb|FK020837.1|FK020837
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|4396573|gb|AI495570.1|AI495570
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|209719745|gb|BW672120.1|BW672120
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|298178505|gb|HO024240.1|HO024240
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|209701982|gb|BW664582.1|BW664582
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|17154018|gb|BM143951.1|BM143951
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTEST: gi|6133848|gb|AW132241.1|AW132241
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: TCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
tgaaaatacaactatggatctagtgaaaaatattatttattatttcggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAG
ttatttc CT-rich tract
atctagtgaaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtacattgtttttttttttttttaaaggttggtaaataatgtgaaaatacaactatggatctagtgaaaaatattatttattatttcggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - -gttggta
- - - - - - - - - - - - - - - - - - - - - - - gaaaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata