1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcactcttagctctctatttctctcttgttcttctgatcatcaatgaatattgggtttctgttcttcaacctatgttcggttaccaaaaatcgctgaggtaacacattcttcaattaacctcttctgcagGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGA
species | Glycine max |
transcript | GLYMA13G19450.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAG GCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAEST: gi|120530228|gb|EH258362.1|EH258362
genomic: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGgtcactctta ... tcttctgcagGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAA
EST: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAG GCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAEST: gi|213601471|gb|DB956735.1|DB956735
genomic: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGgtcactctta ... tcttctgcagGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAA
EST: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAG GCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAEST: gi|209725373|gb|BW658260.1|BW658260
genomic: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGgtcactctta ... tcttctgcagGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAA
EST: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAG GCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAEST: gi|209727793|gb|BW658717.1|BW658717
genomic: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGgtcactctta ... tcttctgcagGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAA
EST: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAG GCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAA
genomic: CTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGgtcactctta ... tcttctgcagGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAA
ttcggttaccaaaaatcgctgaggtaacacattcttcaattaacctcttctgcagGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGA
aattaac putative branch site (score: 2)
cctcttctgc CT-rich tract
ttcaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactcttagctctctatttctctcttgttcttctgatcatcaatgaatattgggtttctgttcttcaacctatgttcggttaccaaaaatcgctgaggtaacacattcttcaattaacctcttctgcagGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT