Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttccatttccgagtaatgtttgcgtctcgctctaactcagcttcgttttcagctaattgtgatttgttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG

Basic information

species Glycine max
transcript GLYMA13G18950.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703775|gb|BW670711.1|BW670711
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGCG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|151400304|gb|EV270118.1|EV270118
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|298181570|gb|HO025745.1|HO025745
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|192301726|gb|FG997640.1|FG997640
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|298190384|gb|HO032505.1|HO032505
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|151398563|gb|EV268434.1|EV268434
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|298192730|gb|HO033164.1|HO033164
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|151403355|gb|EV273165.1|EV273165
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|209718615|gb|BW662707.1|BW662707
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGCG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|254347887|gb|GR854136.1|GR854136
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|213595497|gb|DB966551.1|DB966551
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGCG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|192312569|gb|FK005027.1|FK005027
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|213591304|gb|DB959874.1|DB959874
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGCG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|151397287|gb|EV267160.1|EV267160
EST:     GCTGAGACCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|298184881|gb|HO030094.1|HO030094
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|209707137|gb|BW656754.1|BW656754
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGCG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|12774559|gb|BG239486.1|BG239486
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|14258415|gb|BG881323.1|BG881323
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|209709595|gb|BW661922.1|BW661922
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGCG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|209714364|gb|BW677064.1|BW677064
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGCG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|298174324|gb|HO017660.1|HO017660
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|192312568|gb|FK005026.1|FK005026
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
EST: gi|192300056|gb|FG991860.1|FG991860
EST:     GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACC                         ATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG
genomic: GCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCgtaatcttcc ... gttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgtctcgctctaactcagcttcgttttcagctaattgtgatttgttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG
                                              ttgtttc  CT-rich tract
                                 taattgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatcttccatttccgagtaatgtttgcgtctcgctctaactcagcttcgttttcagctaattgtgatttgttgtttcagATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA