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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgcgtaccttctcgcatctttctcttcttcctaatcctcttcctttcatcttcagatctggatttttttcatttattttcttacgattttcctataatcaatcgtgattattttttgttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG

Basic information

species Glycine max
transcript GLYMA13G18170.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320597|gb|GR827046.1|GR827046
EST:     ATTATTTATTTCAACAGAG                         GAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
genomic: ATTATTTATTTCAACAGAGgttcgcgtac ... gttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
EST: gi|151406209|gb|EV276024.1|EV276024
EST:     ATTATTTATTTCAACAGAG                         GAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
genomic: ATTATTTATTTCAACAGAGgttcgcgtac ... gttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
EST: gi|151404411|gb|EV274221.1|EV274221
EST:     ATTATTTATTTCAACAGAG                         GAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGCTCTGGTGA
genomic: ATTATTTATTTCAACAGAGgttcgcgtac ... gttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
EST: gi|7285126|gb|AW597613.1|AW597613
EST:     ATTATTTATTTCAACAGAG                         GAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
genomic: ATTATTTATTTCAACAGAGgttcgcgtac ... gttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
EST: gi|213598058|gb|DB972246.1|DB972246
EST:     ATTATTTATTTCAACAGAG                         GAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
genomic: ATTATTTATTTCAACAGAGgttcgcgtac ... gttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
EST: gi|254320598|gb|GR827047.1|GR827047
EST:     ATTATTTATTTCAACAGAG                         GAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
genomic: ATTATTTATTTCAACAGAGgttcgcgtac ... gttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA
EST: gi|151398913|gb|EV268784.1|EV268784
EST:     ATTATTTATTTCAACAGAG                         GAAACGCGATCTAGAACTTGCCAAACGGTGTCGGAATTTGTGATCTGGTGA
genomic: ATTATTTATTTCAACAGAGgttcgcgtac ... gttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattttcttacgattttcctataatcaatcgtgattattttttgttgggttagGAAACGCGATCTAGAACTTGCCAAACGGTGTTGGAATTTGTGATCTGGTGAATCATGAATGCTAGGAG
      ttcttac  putative branch site (score: 2)
                                       ttttttgtt  putative PPT
                                 tgattattttttgtt  TA-rich tract