1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatcatttgttttgtaagcttatcaatacttatcacaaaataccatgtttgtgaattatttaatgatcttagttaactgatggactagagaattatgcagCTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAAAATCATGAGCAACAGAACCTGAATCAA
species | Glycine max |
transcript | GLYMA13G17800.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACCGTCCATTAAAAATACT CTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAAEST: gi|37996031|gb|CF807620.1|CF807620
genomic: AACCGTCCATTAAAAATACTgtaagttaat ... aattatgcagCTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAA
EST: ATGATACAGATGCAATCAACTGGACTGAGGAACCGTCCATTAAAAATACT CTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAA
genomic: ATGATACAGATGCAATCAACTGGACTGAGGAACCGTCCATTAAAAATACTgtaagttaat ... aattatgcagCTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAA
tgtttgtgaattatttaatgatcttagttaactgatggactagagaattatgcagCTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAAAATCATGAGCAACAGAACCTGAATCAA
aactgat putative branch site (score: 3)
aattatttaatgatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcatttgttttgtaagcttatcaatacttatcacaaaataccatgtttgtgaattatttaatgatcttagttaactgatggactagagaattatgcagCTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAAAATCATGAGCAACAGAACCTGAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - tgtaagc
- - - - - - - - - - - - - - - - - - - - - ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgatg