1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgaacaacagagcaaatatggtgtatttagaacacaatgtttcatttatttcattgtgtttattttatgttttctttgtcttttttaatattatttcagTCGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTCACCAGGAAG
species | Glycine max |
transcript | GLYMA13G17790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTTTCTCCGACAATCACATTCAACGCTTCTGTCATGGAAGAAGTTAATG TCGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTCEST: gi|37994915|gb|CF806504.1|CF806504
genomic: TGTTTCTCCGACAATCACATTCAACGCTTCTGTCATGGAAGAAGTTAATGgtacatgtct ... attatttcagTCGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTC
EST: TGTTTCTCCGACAATCACATTCAACGCTTCTGTCATGGAAGAAGTTAATG TCGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTC
genomic: TGTTTCTCCGACAATCACATTCAACGCTTCTGTCATGGAAGAAGTTAATGgtacatgtct ... attatttcagTCGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTC
tttatttcattgtgtttattttatgttttctttgtcttttttaatattatttcagTCGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTCACCAGGAAG
ttttaat putative branch site (score: 3)
ttatttc CT-rich tract
tttattttatgttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaacaacagagcaaatatggtgtatttagaacacaatgtttcatttatttcattgtgtttattttatgttttctttgtcttttttaatattatttcagTCGTGGAAACTAAGGATGGAACTGTCTCAGTAGCTGCTGCGTTTGCTGGTCACCAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- -aacaaca
- - - - - - - - -tatggtg
- - - - - - - - - - - - - - - - - -caatgtt