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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatacacacctatccatttttctacaccaaaatttgctctctattgcacttttttttcaaagctaaagcctaagagctttaatttaattttattttttgttccttaatcttgatcctattgtttgtgttgaaaatgtacatgcatgcatgattaatagcattaacatgttaatctgttaattatctacccttcagGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCCTTGTTTGTCAAA

Basic information

species Glycine max
transcript GLYMA13G17750.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327011|gb|FK015193.1|FK015193
EST:     AGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAG                         GGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCT
genomic: AGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGgtacatacac ... tacccttcagGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCT
EST: gi|193421651|gb|FK386212.1|FK386212
EST:     TTCTCAATCTGAATTACCCTTCAATTCAACACCAAG                         GGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCT
genomic: TTCTCAATCTGAATTACCCTTCAATTCAACACCAAGgtacatacac ... tacccttcagGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCT
EST: gi|208271253|gb|GE066649.1|GE066649
EST:     AGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAG                         GGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCT
genomic: AGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGgtacatacac ... tacccttcagGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatgcatgattaatagcattaacatgttaatctgttaattatctacccttcagGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCCTTGTTTGTCAAA
                                           tctacccttc  CT-rich tract
                            ttaatctgttaattat  TA-rich tract