1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacttctacttattaatattttcttctctacctcccatagttcatagcatgaattgtattgaacatattcaactaatttttcttcttctttattttaatttgacagGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTG
species | Glycine max |
transcript | GLYMA13G17370.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGAGTAGTAGCTAGAGTCGGAGCTTCGATCGTTAAACACCTCTGCACAA GGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATCEST: gi|254329165|gb|GR833537.1|GR833537
genomic: CCGAGTAGTAGCTAGAGTCGGAGCTTCGATCGTTAAACACCTCTGCACAAgtacttctac ... aatttgacagGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATC
EST: GCTAGAGTCGGAGCTTCGATCGTTAAACACCTCTGCACAAA GGAATTGTACATCCTTGCGTGGAGTAGGATATA-TCGAAGCGCAAGATAT
genomic: GCTAGAGTCGGAGCTTCGATCGTTAAACACCTCTGCAC-AAgtacttctac ... aatttgacagGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATAT
aattgtattgaacatattcaactaatttttcttcttctttattttaatttgacagGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTG
tttttcttcttcttta CT-rich tract
atattcaactaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttctacttattaatattttcttctctacctcccatagttcatagcatgaattgtattgaacatattcaactaatttttcttcttctttattttaatttgacagGGAATTGTACATCCTTGCGTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA