1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttttgctcttcgattttacagttagaaaccacaattttactcgtgccgattttgtcgatggattgcacggcttaacaatttattatgctcgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT
species | Glycine max |
transcript | GLYMA13G16570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|209702283|gb|BW677978.1|BW677978
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|213611789|gb|DB958883.1|DB958883
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|18848532|gb|BM567716.1|BM567716
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: CGTAGATCCGAGGAGTTAAAGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|192324821|gb|FK018797.1|FK018797
genomic: CGTAGATCCGAGGAGTT-CGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|213599313|gb|DB962322.1|DB962322
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|209702379|gb|BW656354.1|BW656354
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|10846840|gb|BF071428.1|BF071428
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|213590331|gb|DB970129.1|DB970129
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|209710996|gb|BW681346.1|BW681346
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|213600814|gb|DB968820.1|DB968820
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|16349138|gb|BI974733.1|BI974733
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|213607320|gb|DB965150.1|DB965150
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGEST: gi|7686567|gb|AW757215.1|AW757215
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
gccgattttgtcgatggattgcacggcttaacaatttattatgctcgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT
gcttaac putative branch site (score: 3)
ctcgtttt putative PPT
ttaacaatttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgctcttcgattttacagttagaaaccacaattttactcgtgccgattttgtcgatggattgcacggcttaacaatttattatgctcgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT
- - - - - - - - - - - - - -aaccaca
- - - - - - - - - - - - - - - - - - - - ctcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacgg